Locus 41

Sequence ID 4_DroMel_CAF1
Location 385,581 – 385,677
Length 96
Max. P 0.568946
window65

overview

Window 5

Location 385,581 – 385,677
Length 96
Sequences 3
Columns 111
Reading direction forward
Mean pairwise identity 84.98
Mean single sequence MFE -23.04
Consensus MFE -18.22
Energy contribution -18.89
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.71
Structure conservation index 0.79
SVM decision value 0.07
SVM RNA-class probability 0.568946
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 385581 96 + 1281640
AGAUACUCUAUCUUCUUUUAUUCUCCCGAAGAUUGGUGGAGUGCUUCAUUUAGCACGCGAAUCUC-UUUUGUCUCGCAAGUCGAUGGUGA--------------ACAAAUC
.....(.(((((..(((....((..((((...))))..))(((((......)))))((((..(..-....)..)))))))..))))).).--------------....... ( -23.20)
>DroSec_CAF1 4454 111 + 1
UUAUACUCUAUCUUCUUAUAUUCUCCCGAAAAUUGGUUCAGUGCUUCAUUUAGCACGCGAAUCUUGUUUUAUCUCGCAAGUCGAUGGUGUACCAAUACUUAUAGACAAAUC
...(((.(((((................(((((.(((((.(((((......)))))..)))))..)))))....(....)..))))).))).................... ( -21.40)
>DroSim_CAF1 2704 111 + 1
UGAUACUCUAUCUUCUUAUAUUCUCCCGAAGAUUGGUUCAGUGCUUCAUUUAGCACGCGAAUCUUGUUUUAUCUCGCAAGUCGAUGGUGUACCAAUACUUAUAGACAAUUC
(((.(((..((((((............)))))).))))))(((((......)))))((((.............))))..(((...(((((....)))))....)))..... ( -24.52)
>consensus
UGAUACUCUAUCUUCUUAUAUUCUCCCGAAGAUUGGUUCAGUGCUUCAUUUAGCACGCGAAUCUUGUUUUAUCUCGCAAGUCGAUGGUGUACCAAUACUUAUAGACAAAUC
...(((.(((((..(((........((((...))))....(((((......)))))((((.............)))))))..))))).))).................... (-18.22 = -18.89 +   0.67) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:16 2006