Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 383,671 – 383,781 |
Length | 110 |
Max. P | 0.799333 |
Location | 383,671 – 383,781 |
---|---|
Length | 110 |
Sequences | 3 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 91.07 |
Mean single sequence MFE | -25.67 |
Consensus MFE | -20.81 |
Energy contribution | -20.59 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -2.56 |
Structure conservation index | 0.81 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.799333 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 383671 110 - 1281640 UACAGUGUCCAAUGUGACAUUUUCCCAUGUCAUUGUUUCUGAAAAUAAUC----AGUUCAGUUAGUUCAGUUUAAAAUAAUUGAACUGAAGAAAUGUGCAUAAGCUUAGAUGCA ....(((..(...(((((((......))))))).((((((........((----((((((((((.............)))))))))))))))))))..)))..((......)). ( -25.82) >DroSec_CAF1 2525 108 - 1 UACAGUGUCCAAUGUGACAUUGUCCCAUGUCAUUGUUUCUGAAAAUAAUCAUUCAGAUUAGUUAGUUCAGUUUAAAAUAAUUGAAUUGAA------UGCAUAAGCUUACAUGCA .((((((((......))))))))...(((.((((...((((((........)))))).....((((((((((......))))))))))))------)))))..((......)). ( -25.60) >DroSim_CAF1 774 108 - 1 UACAGUGUCCAAUGUGACAUUGUCCCAUGUCAUUGUUUCUGAAAAUAAUCAUUCAGAUUAGUUAGUUCAGUUUAAAAUAAUUGAAUUGAA------UGCAUAAGCUUACAUGCA .((((((((......))))))))...(((.((((...((((((........)))))).....((((((((((......))))))))))))------)))))..((......)). ( -25.60) >consensus UACAGUGUCCAAUGUGACAUUGUCCCAUGUCAUUGUUUCUGAAAAUAAUCAUUCAGAUUAGUUAGUUCAGUUUAAAAUAAUUGAAUUGAA______UGCAUAAGCUUACAUGCA ..(((........(((((((......))))))).....)))....................(((((((((((......)))))))))))........((((........)))). (-20.81 = -20.59 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:14 2006