Locus 39

Sequence ID 4_DroMel_CAF1
Location 382,508 – 382,610
Length 102
Max. P 0.942077
window63

overview

Window 3

Location 382,508 – 382,610
Length 102
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 68.57
Mean single sequence MFE -25.30
Consensus MFE -13.41
Energy contribution -14.13
Covariance contribution 0.72
Combinations/Pair 1.20
Mean z-score -1.84
Structure conservation index 0.53
SVM decision value 1.32
SVM RNA-class probability 0.942077
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 382508 102 + 1281640
---CU-------------UA-UUAAAUGUAUUUGUUCAUAU-AUUUCCGUUUUUUAAUUUCAGUUACUAAUCAGUGGUACGUCCCAGUGCUAAAAGGUGAUGUACCGAACGGAUGCGCUG
---..-------------..-......((((((((((....-.......................(((....)))((((((((((..........)).)))))))))))))))))).... ( -25.50)
>DroVir_CAF1 156 88 + 1
---------------------------CUAA----UUAUUUAGUUUUCCUUUAUU-UUUGUAGUUACUAAUCAAUGGUAUGUGCCUGUGUUGAAAGGUGAUGUGCCAAACGGAUGUGCUG
---------------------------....----.....((((..(((.((((.-...))))...........((((((((((((........)))).))))))))...)))...)))) ( -17.30)
>DroGri_CAF1 462 106 + 1
CAAUUGAUAAUUUCA----AUUG----CUAA----UUGU-CAAUUUCCAAUUAUU-AAUUUAGUCACCAAUCAAUGGUAUGUGCCCGUGCUGAAGGGCGAUGUGCCAAAUGGUUGUGCCG
.(((((((((((..(----((((----(...----..).-)))))...)))))))-))))..(.(((.(((((.((((((((((((........)))).))))))))..)))))))).). ( -30.10)
>DroSec_CAF1 1347 101 + 1
---CC-------------UA-UUAAAUAUAUUUGUUCAUAU-AUUUCCGUUU-UUAAUUUCAGUUACUAAUCAGUGGUACGUCCCAGUACUAAAAGGAGAUGUACCGAACGGAUGCGCUG
---..-------------..-.......(((((((((.(((-(((((((((.-.((((....))))..)))...((((((......))))))...)))))))))..)))))))))..... ( -23.60)
>DroEre_CAF1 2220 112 + 1
---CGUAUAAAUUCAAUGUAUUU----GUAUUUGUUCACAU-AUUUUCGUUUUUUAAUUAAAGUUACUAAUCAGUGGUACGUCCCAGUGCUAAAAGGAGAUGUACCGAACGGAUGCGCUG
---....................----((((((((((....-(((((.(((....))).)))))...........((((((((((..........)).)))))))))))))))))).... ( -25.50)
>DroYak_CAF1 5732 105 + 1
---U-----------AUCUAUUUGGACGUAUUUGUUCAUAU-AUUUUUCUUAUUUAAUUGAAGUUACUAAUCAGUGGUACGUCCCAGUGCUAAAAGGAGAUGUACCGAACGGAUGCGCUG
---.-----------........((.(((((((((((....-..............(((((.........)))))((((((((((..........)).))))))))))))))))))))). ( -29.80)
>consensus
___C______________UA_UU____GUAUUUGUUCAUAU_AUUUCCGUUUUUUAAUUUAAGUUACUAAUCAGUGGUACGUCCCAGUGCUAAAAGGAGAUGUACCGAACGGAUGCGCUG
............................(((((((((.........................(........)...((((((((((..........)).)))))))))))))))))..... (-13.41 = -14.13 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:13 2006