| Sequence ID | 4_DroMel_CAF1 |
|---|---|
| Location | 362,190 – 362,292 |
| Length | 102 |
| Max. P | 0.940054 |
| Location | 362,190 – 362,292 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.35 |
| Mean single sequence MFE | -26.13 |
| Consensus MFE | -9.66 |
| Energy contribution | -9.90 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.37 |
| SVM decision value | 1.28 |
| SVM RNA-class probability | 0.940054 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 362190 102 + 1281640 -------CCUU-UU-GAACGAUAAAUUGGAGC-UCGGCUUGCCGAGUAAUUUAAUUUGUUUAAGGUGUGUGAAUCUAUACUC----GCUUUAA-AUUUUCUAAUUUAAGUGAAUGUA--- -------....-..-..((..(((((((((((-((((....))))))..........((((((((((.(((......))).)----)))))))-))..))))))))).)).......--- ( -27.10) >DroSec_CAF1 9938 108 + 1 -------CCUACCUAAAACGAUAAAUGGGAGC-UCGGCUUGCCGAGUAUUUUAAUUUGUUUAAGGUGUGUGAAUCUAUACUCCAACGCAUUAA-AUUUCCUAGUUUUCGUGAAUGUA--- -------..(((.....((((....(((((((-((((....))))))..((((((.((((...((.(((((....))))).)))))).)))))-)..)))))....))))....)))--- ( -29.00) >DroSim_CAF1 6618 107 + 1 -------CCUU-UUAAAACGAUAAAUGGGAGC-UCGGCUUGCCGAGUAUUUUAAUUUGUUUAAGGUGUGUGAAUCUAUACUCCAACGCUUUAA-AUUUCCUAGUUUUCGUGAAUGUA--- -------....-.....((((....(((((((-((((....))))))..........(((((((((((..((........))..)))))))))-)).)))))....)))).......--- ( -29.60) >DroEre_CAF1 19587 112 + 1 AAUUACGCAUU-UUAAAAUGAUAAGUCGGAGCUUCGGCUUGCCGAGUAUUUUAAUAUGUUUAA---GUGUGAGUCCUUACUUUU-UACUUAAUUUUUUUUUAAUUUACGUGAAUGUA--- ..((((((((.-((((((((.....(((((((....)))..)))).)))))))).))))((((---(((.((((....))))..-)))))))................)))).....--- ( -24.80) >DroYak_CAF1 19002 116 + 1 AAUUACGCCUU-UCAAAAUGAUAC--AGGAGCUUCGGCUUGCCGAGUAUUUUAAUCUGCUUAUGGUGUGUGAAUCCUUACAUUU-UACUUUAUUUUUUUCUAAUUUACGUAAUUGUACUG (((((((....-..((((.((((.--((((((....))))((((((((........)))))..)))((((((....))))))..-..)).)))).))))........)))))))...... ( -20.14) >consensus _______CCUU_UUAAAACGAUAAAUGGGAGC_UCGGCUUGCCGAGUAUUUUAAUUUGUUUAAGGUGUGUGAAUCUAUACUCCA_CGCUUUAA_AUUUUCUAAUUUACGUGAAUGUA___ .................(((.....(((((((.((((....))))))...................(((((....))))).................))))).....))).......... ( -9.66 = -9.90 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:09 2006