Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 359,897 – 360,012 |
Length | 115 |
Max. P | 0.752628 |
Location | 359,897 – 360,012 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 77.23 |
Mean single sequence MFE | -19.10 |
Consensus MFE | -12.12 |
Energy contribution | -13.23 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.04 |
Mean z-score | -1.72 |
Structure conservation index | 0.63 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.752628 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 359897 115 + 1281640 AACAAUAAUGUGUUACUGAUAUGGUAUAUAUGUUAUAUAAAACCGAUAUAUCGACGUUAACACGAACGACUAGUUAC-UUUAUUAAAAAUAUAUACACCUUAUGGGUAAUUUUCCC ...........((((((.(((.(((.((((((((..(((((..(((....))).((((......)))).........-)))))....)))))))).))).))).))))))...... ( -20.80) >DroSec_CAF1 7535 93 + 1 AAAAAUAAGGCGUUACUGAUAUGAUAUAUAUUUGGUAUAAAACCGAUAUAUCGACGUUCACCCGUACGGCUAGUUACCUUUAUUACAAAUAUA----------------------- ...(((((((.((.((((...(((((((...(((((.....)))))))))))).(((........)))..)))).))))))))).........----------------------- ( -18.10) >DroSim_CAF1 4390 92 + 1 A-AAAUAAGGCGUUACUGAUAUGAUAUAUAUUUGGUAUAAAACCGAUAUAUCGACGUUCACACGUACGGCUAGUUACCUUUAUUACAAAUAUA----------------------- .-.(((((((.((.((((...(((((((...(((((.....))))))))))))((((....)))).....)))).))))))))).........----------------------- ( -18.40) >consensus AAAAAUAAGGCGUUACUGAUAUGAUAUAUAUUUGGUAUAAAACCGAUAUAUCGACGUUCACACGUACGGCUAGUUACCUUUAUUACAAAUAUA_______________________ ...(((((((.((.((((...((((((((....(((.....))).)))))))).(((........)))..)))).)))))))))................................ (-12.12 = -13.23 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:08 2006