Locus 35

Sequence ID 4_DroMel_CAF1
Location 333,514 – 333,607
Length 93
Max. P 0.587662
window58

overview

Window 8

Location 333,514 – 333,607
Length 93
Sequences 3
Columns 108
Reading direction reverse
Mean pairwise identity 65.05
Mean single sequence MFE -27.37
Consensus MFE -13.22
Energy contribution -14.00
Covariance contribution 0.78
Combinations/Pair 1.07
Mean z-score -1.69
Structure conservation index 0.48
SVM decision value 0.11
SVM RNA-class probability 0.587662
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 333514 93 - 1281640
GGUAAAGAA---------GCUUAUAUU--GGUGUACCCACCAUAUCUUAA----AAAUUGUUGUUCUUUUGCAGCUGAUGGAGUUGCAUUGGGAGCAGCUGCCACCAC
((((.....---------........(--((((....)))))........----.....(((((((((.(((((((.....)))))))..)))))))))))))..... ( -29.40)
>DroGri_CAF1 5456 102 - 1
GGUGGGCACACUGAAAGUUCUU-----CUCGUUUCUCUGCUUUGAUUUUUAUUUGCUUUGUUGUA-AUUUUCAGCCGAUGGAGUCGCUUUGGGCGCUGCUGCCACCAC
(((((((((.((.(((((.(((-----((((.......((...(((....))).))...((((..-.....))))))).))))..))))).)).).)))..))))).. ( -26.60)
>DroSim_CAF1 381 92 - 1
GGUAAAUAA---------GCUUAUAUU--GGUGUACCCACCAUAUCUUAA-----AAUUGGCGUACUUUUGCAGCUGAUGGAGUUGCAUUGGGAGCAGCUGCCACCAC
(((.....(---------(((.....(--((((....)))))........-----.....((...((..(((((((.....)))))))..))..))))))...))).. ( -26.10)
>consensus
GGUAAACAA_________GCUUAUAUU__GGUGUACCCACCAUAUCUUAA_____AAUUGUUGUACUUUUGCAGCUGAUGGAGUUGCAUUGGGAGCAGCUGCCACCAC
(((..........................((((....))))......................................((((((((.......)))))).))))).. (-13.22 = -14.00 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:06 2006