Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 290,605 – 290,720 |
Length | 115 |
Max. P | 0.895264 |
Location | 290,605 – 290,720 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 90.72 |
Mean single sequence MFE | -25.71 |
Consensus MFE | -22.77 |
Energy contribution | -23.00 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.08 |
Mean z-score | -2.35 |
Structure conservation index | 0.89 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.895264 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 290605 115 - 1281640 AGUCGUGACUAUGUGUCAUGAUGUAAACUAAAUAAGGUAAAAGUCAUUAAACUCUUCGGCUUGGGCAUGCCAAAAUAUUGAUUAGAGAAUCAGUAACUAAUAAGAGUACCUUAAA .((((((((.....))))))))..........((((((............((((((.(((........)))....((((((((....))))))))......)))))))))))).. ( -29.90) >DroSim_CAF1 2279 115 - 1 AAUCGUGACUAUGUGUCAUGAUGUAAACUAAAUAAGAUAAAAGUCAUUAAACUCUUCGGCUGGGGCAUGCCAAAAUAUGGAUUAGAGACUCAGUAACUAAUAAGAGUACCUUAAA .((((((((.....)))))))).............(((....))).....((((((..((((((.....(((.....)))........)))))).......))))))........ ( -23.82) >DroYak_CAF1 1629 115 - 1 AAUCGUGACUAUGUGUCAUGAUCUAAGUUCAAUAAAAGAAAAGUCAAUAAACUCUUUGGCUUGGGCAUGCCAAAAUGUUGAUUAUAAAAUCAGUAACUAAUAAGAGUACCUUAAA .((((((((.....)))))))).(((((((.......)))..........((((((((((........))))))...((((((....))))))..........))))..)))).. ( -23.40) >consensus AAUCGUGACUAUGUGUCAUGAUGUAAACUAAAUAAGAUAAAAGUCAUUAAACUCUUCGGCUUGGGCAUGCCAAAAUAUUGAUUAGAGAAUCAGUAACUAAUAAGAGUACCUUAAA .((((((((.....))))))))............................((((((.(((........)))....((((((((....))))))))......))))))........ (-22.77 = -23.00 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:04 2006