Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 288,876 – 288,990 |
Length | 114 |
Max. P | 0.987879 |
Location | 288,876 – 288,990 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.97 |
Mean single sequence MFE | -27.37 |
Consensus MFE | -15.97 |
Energy contribution | -16.20 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.09 |
Mean z-score | -2.86 |
Structure conservation index | 0.58 |
SVM decision value | 2.10 |
SVM RNA-class probability | 0.987879 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 288876 114 + 1281640 AA-AACUUUUAGUUACAAGAAUUAACUUUUUUGAAAUAGAUGUCCACUUAUUUUGACCAAUUGAGUGG-ACCUUGCAAAGAUCUAUUUCAAAAUAAAAAUUA----UGCUGGCUUAUAAG ..-..(((..(((((((..((((.....((((((((((((((((((((((...........)))))))-))((.....)))))))))))))))....)))).----)).)))))...))) ( -27.10) >DroSim_CAF1 419 115 + 1 GA-AACUUUUAGUUAAGAGGCUUAACUUUUUUGAAAUAGAUGUCCACUUAUUUUGACCAAUUGAGUGGAACCUUGCCAAAAUCUAUUUCAAAAUAAAAAUUA----UGUUGCCUUAUAAU ..-........((((.(((((.(((...(((((((((((((.((((((((...........))))))))...........)))))))))))))......)))----....))))).)))) ( -27.80) >DroYak_CAF1 400 118 + 1 GAGAAGCUUCUGUUAAGUGAUUAAAGUUUUGUGAAAUAGAUGCCCACUCAA-CUGACCAAUUGAGAGG-AGCUUGCAAAGAUCUAUUUCAGAAUAAGAAUUACAUAUUUUGCUUUACUUC ..(((((......((.((((((......((.((((((((((((((.(((((-........))))).))-.))........)))))))))).))....)))))).))....)))))..... ( -27.20) >consensus GA_AACUUUUAGUUAAGAGAAUUAACUUUUUUGAAAUAGAUGUCCACUUAUUUUGACCAAUUGAGUGG_ACCUUGCAAAGAUCUAUUUCAAAAUAAAAAUUA____UGUUGCCUUAUAAC ............................((((((((((((((((((((((...........)))))))......))....)))))))))))))........................... (-15.97 = -16.20 + 0.23)
Location | 288,876 – 288,990 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.97 |
Mean single sequence MFE | -24.80 |
Consensus MFE | -14.41 |
Energy contribution | -14.53 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.06 |
Mean z-score | -2.47 |
Structure conservation index | 0.58 |
SVM decision value | 1.33 |
SVM RNA-class probability | 0.942346 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 288876 114 - 1281640 CUUAUAAGCCAGCA----UAAUUUUUAUUUUGAAAUAGAUCUUUGCAAGGU-CCACUCAAUUGGUCAAAAUAAGUGGACAUCUAUUUCAAAAAAGUUAAUUCUUGUAACUAAAAGUU-UU .(((((((......----((((((((...(((((((((((((.....))((-(((((..(((......))).))))))))))))))))))))))))))...))))))).........-.. ( -24.90) >DroSim_CAF1 419 115 - 1 AUUAUAAGGCAACA----UAAUUUUUAUUUUGAAAUAGAUUUUGGCAAGGUUCCACUCAAUUGGUCAAAAUAAGUGGACAUCUAUUUCAAAAAAGUUAAGCCUCUUAACUAAAAGUU-UC .......(....).----.(((((((.(((((((((((((.........((.(((((..(((......))).)))))))))))))))))))).(((((((...))))))))))))))-.. ( -23.90) >DroYak_CAF1 400 118 - 1 GAAGUAAAGCAAAAUAUGUAAUUCUUAUUCUGAAAUAGAUCUUUGCAAGCU-CCUCUCAAUUGGUCAG-UUGAGUGGGCAUCUAUUUCACAAAACUUUAAUCACUUAACAGAAGCUUCUC (((((...(((.....)))...........((((((((((........((.-((.(((((((....))-))))).))))))))))))))........................))))).. ( -25.60) >consensus AUUAUAAGGCAACA____UAAUUUUUAUUUUGAAAUAGAUCUUUGCAAGGU_CCACUCAAUUGGUCAAAAUAAGUGGACAUCUAUUUCAAAAAAGUUAAAUCUCUUAACUAAAAGUU_UC ...........................(((((((((((((.((..(......((........)).........)..)).)))))))))))))............................ (-14.41 = -14.53 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:02 2006