Locus 31

Sequence ID 4_DroMel_CAF1
Location 276,482 – 276,597
Length 115
Max. P 0.724585
window53

overview

Window 3

Location 276,482 – 276,597
Length 115
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 80.46
Mean single sequence MFE -24.77
Consensus MFE -17.07
Energy contribution -16.99
Covariance contribution -0.08
Combinations/Pair 1.34
Mean z-score -1.57
Structure conservation index 0.69
SVM decision value 0.41
SVM RNA-class probability 0.724585
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 276482 115 + 1281640
AGAACUCUUGUCCCUUCUUAAAUUGUUAUCUAAUUGCCCUUUAUUUACACAUGAAGGAAUUCAGCUUAAGUUUGGCGAUGCUCCACUAAGCAUUCUCGAAGACAAAGUUCUUUUG
((((((.(((((....(((((.(((......((((..(((((((......)))))))))))))).)))))(((((.((((((......)))))).)))))))))))))))).... ( -25.10)
>DroSec_CAF1 1462 115 + 1
AGAACUCUUGUCCCUUCUUAAAUUGUUAUCUAAUUGCCCUUUAUUUACACAUGAAGGAAUUCAGUUUAAGUUUGGCGAUGCUCCACUAAACAUUCUGGAAGACAAAGUUCUUUUG
((((((.(((((.........................(((((((......)))))))..(((((.....((((((.(......).))))))...))))).))))))))))).... ( -24.80)
>DroSim_CAF1 739 115 + 1
AGAACUCUUGUCCCUUCUUAAAUUGUUAUCUAAUUGCCCUUUAUUUACACAUGAAGGAAUUCAGUUUAAGUUUGGCGAUGCUCCACUAAACAUUCUGGAAGACAAAGUUCUUUUG
((((((.(((((.........................(((((((......)))))))..(((((.....((((((.(......).))))))...))))).))))))))))).... ( -24.80)
>DroEre_CAF1 1838 109 + 1
AGAGCUUUUGUCCCAUCUUAAAUUGUUAUCUAAUUGCCCCAUAUUUGCACAUGAGGGAAUUCAAUUUAAGUUUGGCGAUGCA------GACAUUCUCGACGACAAAGUUCUUUUG
((((((((.((((((.(((((((((......((((.((((((........))).))))))))))))))))..))).((((..------..))))......))))))))))).... ( -25.30)
>DroYak_CAF1 757 115 + 1
CGAGCUUUUGUCCCAUCUUAAAUUGUUAUCUAAUAGCCCUAUAUUUGCACAUGAGGGAGUUCAGUUUAAGUUUGACAAUGCACACCUAGACAUUCUCGAAGACAAAGUUCUUUUG
.(((((((.(((....(((((((((....((.....((((.(((......)))))))))..)))))))))(((((.(((((.......).)))).)))))))))))))))..... ( -24.20)
>DroPer_CAF1 726 115 + 1
GGAGCUCUUGUCUCGUUUAAAAUUAUUAUCCGAAACCCACCUGGCUGAGCUAGGAGGAGUACAAUUAAAAUUAGAUAAUAUACGACAAGAUAUUCUUGAAGAUAAAGUACUUUUG
(((..((((((((((..(((.....)))..))).((((.((((((...)))))).)).)).......................)))))))..))).................... ( -24.40)
>consensus
AGAACUCUUGUCCCUUCUUAAAUUGUUAUCUAAUUGCCCUUUAUUUACACAUGAAGGAAUUCAGUUUAAGUUUGGCGAUGCACCACUAAACAUUCUCGAAGACAAAGUUCUUUUG
.(((((.(((((....(((((((((............(((((((......)))))))....)))))))))(((((.((((..........)))).)))))))))))))))..... (-17.07 = -16.99 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:00 2006