Locus 27

Sequence ID 4_DroMel_CAF1
Location 259,537 – 259,642
Length 105
Max. P 0.623268
window46

overview

Window 6

Location 259,537 – 259,642
Length 105
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 81.67
Mean single sequence MFE -24.97
Consensus MFE -20.86
Energy contribution -21.20
Covariance contribution 0.34
Combinations/Pair 1.07
Mean z-score -1.34
Structure conservation index 0.84
SVM decision value 0.18
SVM RNA-class probability 0.623268
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 259537 105 + 1281640
UCAUAUACGUUUGCGAAUGCCGACCACAGAUGUGCAUCGCAUCAAUCAGCUAGCCAAUUCUAAAUAUAUAUUCUACAUACGCUGACACCAAAAUCGGAACAAAAA---------------
.......((....))....((((.....((((((...))))))..(((((..............................)))))........))))........--------------- ( -15.41)
>DroSec_CAF1 1779 120 + 1
UCAUAUAAGUUUGCGACUGCCGUCCACAGAUGUGCAUCGCAUCAACCAGCUAGCCAAUUCUAAAUAUGUAUUCUACAUACGCUGGUGCGACUGUCAUGACUUGAAUCCUCGUAAUGCUUU
......((((.(((((.(((((((....)))).))))))))...(((((((((......)))..((((((...)))))).))))))((((...(((.....)))....))))...)))). ( -29.80)
>DroSim_CAF1 1730 120 + 1
UCAUAUACGUUUGCGACUGCCGUCCACAGAUGUGCAUCGCAUCAACCAGCUAGCCAAUUCUAAAUAUGUAUUCUACAUACGCUGGUGCGACUGUCAUGACUUGAAUCCUCGUAAUGCUUU
...........(((((.(((((((....)))).))))))))...(((((((((......)))..((((((...)))))).))))))((((...(((.....)))....))))........ ( -29.70)
>consensus
UCAUAUACGUUUGCGACUGCCGUCCACAGAUGUGCAUCGCAUCAACCAGCUAGCCAAUUCUAAAUAUGUAUUCUACAUACGCUGGUGCGACUGUCAUGACUUGAAUCCUCGUAAUGCUUU
........((((((((.(((((((....)))).))))))))...(((((((((......)))..((((((...)))))).))))))...........))).................... (-20.86 = -21.20 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:52 2006