Locus 26

Sequence ID 4_DroMel_CAF1
Location 252,776 – 252,896
Length 120
Max. P 0.970142
window45

overview

Window 5

Location 252,776 – 252,896
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 81.33
Mean single sequence MFE -31.05
Consensus MFE -19.94
Energy contribution -23.06
Covariance contribution 3.12
Combinations/Pair 1.25
Mean z-score -2.58
Structure conservation index 0.64
SVM decision value 1.65
SVM RNA-class probability 0.970142
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 252776 120 - 1281640
AUUAAUGGGUCCGUUUUAAUAGAUGCAUCUAUAAUAAUAGGGUUAUUGGAUUCGGAGUCUUCUAUCUCAACAGUUCUCUCCAUAUCCGAUGAGCUAAUAUCUAAAGACGGCUUGUCAAUU
....(..((.(((((((..((((((...((((....))))(.(((((((((..((((....((........))....))))..))))))))).)...)))))))))))))))..)..... ( -32.70)
>DroSec_CAF1 3811 120 - 1
AAUGAUGGGUCCGUUUUAAUAGAUGCAUCUAUAAUAAUAGAGUUAUUGGAUUCGGAGUCUUUUAUGUCAACAGUUCUCUCCACAUCCGAUGAGGUAAUAUCUAUAGACGGCUUACUAAUU
.....((((.((((((..(((((((..(((((....))))).(((((((((..((((.......((....)).....))))..))))))))).....)))))))))))))))))...... ( -31.20)
>DroSim_CAF1 2701 120 - 1
AAUGAUGGGUCCGUUUUAAUAGAUGCAUCUAUAAUAAUAGGGUUAUUGGAUUCGGAGUCUUUUAUGUCAACAGUUCUCUCCACAUCCGAUGAGGUAAUAUCUAUAGACGGCUUAUUAAUU
..(((((((.((((((..(((((((..(((((....))))).(((((((((..((((.......((....)).....))))..))))))))).....))))))))))))))))))))... ( -34.00)
>DroEre_CAF1 12228 120 - 1
AUAGAUGGGUCCGUCUUAAUAGAUGAAUCUAUAAUAAUGGGGUCAUUGGAUUCUAAGUAUUCCAUCUUAAGAGUUCUCUCCGCAUCUGAUGAGCCAAUAUCUAAACACGGCUUAUCAAUU
..((((((((.(((((....))))).))).........((((.....((((((((((........))).))))))).)))).)))))((((((((.............)))))))).... ( -33.22)
>DroYak_CAF1 4451 105 - 1
AUGGAUGGGUUCGUCUUAAUAGAUGAAUCGAUAAUAAUGGGGU---------------UUUCCAUCUUAAGAGUUCUCUCCGCAUCUGAUGAGUCAUUAUUUAAACACGGCUUUUCUAUU
..((((((((((((((....))))))))).........((((.---------------.(((........)))....)))).)))))((.(((((.............))))).)).... ( -24.12)
>consensus
AUUGAUGGGUCCGUUUUAAUAGAUGCAUCUAUAAUAAUAGGGUUAUUGGAUUCGGAGUCUUCUAUCUCAACAGUUCUCUCCACAUCCGAUGAGCUAAUAUCUAAAGACGGCUUAUCAAUU
..(((((((.(((((((..((((((..(((((....))))).(((((((((..((((.......((....)).....))))..))))))))).....))))))))))))))))))))... (-19.94 = -23.06 +   3.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:50 2006