Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 251,997 – 252,105 |
Length | 108 |
Max. P | 0.584258 |
Location | 251,997 – 252,105 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 88.59 |
Mean single sequence MFE | -23.87 |
Consensus MFE | -16.74 |
Energy contribution | -17.30 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.07 |
Mean z-score | -2.40 |
Structure conservation index | 0.70 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.584258 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 251997 108 + 1281640 ACAUUAUUUGAGUGUCUCUAUAUGUAUUUACAUUCAGCAUAAAAUGCGAUAUUUUAUAACUGAG--UGUGUUGCAUGUGCUUUAUUAUAAAUUACACCCUUAU-GUAAUAA (((((.....)))))...((((((((..(((((((((.((((((((...))))))))..)))))--)))).))))))))...........((((((......)-))))).. ( -23.00) >DroSec_CAF1 2954 111 + 1 ACUUUAUUUGAGUGUCUGUAUAUGUAUUUACAUUCAGCAUAAAAUGCUAUGUUUUAUAACUGUGUGUGUGUUGCAUAUGCUUUAUUAGAAAUUACAUACGUAAAACAUUUA ........(((((((..(((((((((..(((((.(((.(((((((.....)))))))..))).)))))...)))))))))...........((((....)))).))))))) ( -24.30) >DroSim_CAF1 1849 110 + 1 ACUUUAU-UGAGUGUCUGUAUAUGUAUUUACAUUCAGCAUAAAAUGCUAUGUUUUAUAACUGUGUGUGUGUUGCAUAUGCUUUAUUAGAAAUUACAUACGUAAAACAUUUA .......-(((((((..(((((((((..(((((.(((.(((((((.....)))))))..))).)))))...)))))))))...........((((....)))).))))))) ( -24.30) >consensus ACUUUAUUUGAGUGUCUGUAUAUGUAUUUACAUUCAGCAUAAAAUGCUAUGUUUUAUAACUGUGUGUGUGUUGCAUAUGCUUUAUUAGAAAUUACAUACGUAAAACAUUUA ..........((((...(((((((((..(((((.(((.(((((((.....)))))))..))).)))))...)))))))))..))))......................... (-16.74 = -17.30 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:49 2006