Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 249,211 – 249,331 |
Length | 120 |
Max. P | 0.626238 |
Location | 249,211 – 249,331 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.00 |
Mean single sequence MFE | -35.43 |
Consensus MFE | -18.63 |
Energy contribution | -18.55 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.30 |
Mean z-score | -2.09 |
Structure conservation index | 0.53 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.626238 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 249211 120 + 1281640 GUUUGUGACAACUCCUCGUUGGAAGAAUGGUGUGCCUGCUAGCUUAGGUACACUGCCCUUUCCUCCAAAAGAGUCAAGCCCGGCAAUAAAGCCGUAUCCAAACUGGGAGGCUCAUGGAAA .((..(((...(((((..(((((.....((((((((((......))))))))))...(((..(((.....)))..)))..((((......))))..)))))...)))))..)))..)).. ( -41.00) >DroPse_CAF1 5579 120 + 1 AUUUAUUACUACGCCUCGUUGGAAAGACGGCGUACCCGCAAGUUUGGGUACUAUUCCGUUCCCGACGAGGGAAUUAAGUCCAGCAAUUAAACCAUAUCCCAAUUGGGAAGCUCAUGGAAA ............((((((((((...(((((.(((((((......)))))))....))))).))))))))(((......))).)).......((((.((((....)))).....))))... ( -39.70) >DroEre_CAF1 7575 120 + 1 UUUUAUUACAACUCCUCGUUGGAAGAAUGGUGUGCCUGCUAGCUUAGGUACACUGCCGUUUCCUCCAAAGGAGUCAAGCCCAGCAAUAAAGCCCUAUCCAAACUGGGAGGCUCAUGGAAA ....................(((((..(((((((((((......)))))))))))...)))))((((...(((((...(((((...................))))).))))).)))).. ( -36.31) >DroYak_CAF1 69 120 + 1 GUUUGUUACAACUCCUCGUUGGAAAAAUGGUGUACCUGCUAGUUUAGGUACACUGCCGCUUCCUCCAAAAGAGUCCAGCCCAGCAAUUAAGCCCUAUCCAAGCUGGGAGGCUCAUGGAAA ............(((..(..((((....((((((((((......)))))))))).....))))..)....(((((...((((((.................)))))).)))))..))).. ( -37.63) >DroAna_CAF1 121129 120 + 1 GUUUAUUACAACUCCUCGAUGGAAAAAUGGCGUUCCUGCAACUUUAAGCACCAUUUCUUAUCUUUCAAAGGAAAUAAGUCCAGCAUUAAAACCAUAUCCAAAAUGGGAAGAUCAUGGAAA ............((((.((.(((.((((((.(((............))).))))))....))).))..))))......((((.........((((.......))))........)))).. ( -18.23) >DroPer_CAF1 27650 120 + 1 AUUUAUUACUACGCCUCGUUGGAAAGACGGCGUACCCGCAAGUUUGGGUACUAUUCCGUUCCCGACGAGGGAAUUAAGUCCAGCAAUUAAACCAUAUCCCAAUUGGGAAGCUCAUGGAAA ............((((((((((...(((((.(((((((......)))))))....))))).))))))))(((......))).)).......((((.((((....)))).....))))... ( -39.70) >consensus GUUUAUUACAACUCCUCGUUGGAAAAAUGGCGUACCUGCAAGUUUAGGUACAAUGCCGUUUCCUCCAAAGGAAUCAAGCCCAGCAAUAAAACCAUAUCCAAACUGGGAAGCUCAUGGAAA ............(((..(((((.........(((((((......)))))))......(((((.......))))).....)))))............(((......))).......))).. (-18.63 = -18.55 + -0.08)
Location | 249,211 – 249,331 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.00 |
Mean single sequence MFE | -37.37 |
Consensus MFE | -19.93 |
Energy contribution | -19.60 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.33 |
Mean z-score | -1.95 |
Structure conservation index | 0.53 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.550452 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 249211 120 - 1281640 UUUCCAUGAGCCUCCCAGUUUGGAUACGGCUUUAUUGCCGGGCUUGACUCUUUUGGAGGAAAGGGCAGUGUACCUAAGCUAGCAGGCACACCAUUCUUCCAACGAGGAGUUGUCACAAAC .......((((((((......)))..((((......)))))))))((((((((((((((((.((...((((..(((...)))...)))).)).))))))))..))))))))......... ( -41.00) >DroPse_CAF1 5579 120 - 1 UUUCCAUGAGCUUCCCAAUUGGGAUAUGGUUUAAUUGCUGGACUUAAUUCCCUCGUCGGGAACGGAAUAGUACCCAAACUUGCGGGUACGCCGUCUUUCCAACGAGGCGUAGUAAUAAAU ......((((((((((....))))...))))))(((((((((......))((((((.((((((((....((((((........)))))).))))..)))).))))))..))))))).... ( -41.40) >DroEre_CAF1 7575 120 - 1 UUUCCAUGAGCCUCCCAGUUUGGAUAGGGCUUUAUUGCUGGGCUUGACUCCUUUGGAGGAAACGGCAGUGUACCUAAGCUAGCAGGCACACCAUUCUUCCAACGAGGAGUUGUAAUAAAA .......((((((..((((..((......))..))))..))))))((((((((((((((((......((((.(((........))).))))..))))))))..))))))))......... ( -37.60) >DroYak_CAF1 69 120 - 1 UUUCCAUGAGCCUCCCAGCUUGGAUAGGGCUUAAUUGCUGGGCUGGACUCUUUUGGAGGAAGCGGCAGUGUACCUAAACUAGCAGGUACACCAUUUUUCCAACGAGGAGUUGUAACAAAC ((((((.(((((.((((((..((......)).....))))))..)).)))...))))))..(((((.((((((((........))))))))......(((.....))))))))....... ( -40.20) >DroAna_CAF1 121129 120 - 1 UUUCCAUGAUCUUCCCAUUUUGGAUAUGGUUUUAAUGCUGGACUUAUUUCCUUUGAAAGAUAAGAAAUGGUGCUUAAAGUUGCAGGAACGCCAUUUUUCCAUCGAGGAGUUGUAAUAAAC ....((...(((((......((((.(((((.((..(((.(.(((.(((((..((....))...)))))))).)........)))..)).)))))...))))..)))))..))........ ( -22.60) >DroPer_CAF1 27650 120 - 1 UUUCCAUGAGCUUCCCAAUUGGGAUAUGGUUUAAUUGCUGGACUUAAUUCCCUCGUCGGGAACGGAAUAGUACCCAAACUUGCGGGUACGCCGUCUUUCCAACGAGGCGUAGUAAUAAAU ......((((((((((....))))...))))))(((((((((......))((((((.((((((((....((((((........)))))).))))..)))).))))))..))))))).... ( -41.40) >consensus UUUCCAUGAGCCUCCCAGUUUGGAUAUGGCUUAAUUGCUGGACUUAACUCCUUUGGAGGAAACGGAAGUGUACCUAAACUAGCAGGUACACCAUUUUUCCAACGAGGAGUUGUAAUAAAC ..((((.((((((((......)))...)))))......))))...((((((.(((..(((((.((....((.(((........))).)).))...)))))..)))))))))......... (-19.93 = -19.60 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:48 2006