Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 225,898 – 226,040 |
Length | 142 |
Max. P | 0.999916 |
Location | 225,898 – 226,017 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.14 |
Mean single sequence MFE | -25.75 |
Consensus MFE | -12.90 |
Energy contribution | -12.80 |
Covariance contribution | -0.10 |
Combinations/Pair | 1.25 |
Mean z-score | -2.67 |
Structure conservation index | 0.50 |
SVM decision value | 1.31 |
SVM RNA-class probability | 0.940129 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 225898 119 + 1281640 AUUUCAAUACCAAUAUUUACGAAAUAAGCAUUAGUGCACUAGUGCAAAGCAAGAUAUUGGCUUUUCCACU-UCAGAUGAAACAGAAUACGUACAUGUAUUCAGAUGUGUACACAUAAGCA ..........((((((((.........(((((((....)))))))......))))))))(((((((...(-((....)))...)))...((((((((......))))))))....)))). ( -23.26) >DroPse_CAF1 3573 108 + 1 AUUU-----CCAUUAUAUACGGA-UGGGUAUGCAUCCA------UCAAACAAGUUAUUGGCUUUAACACAUGCACAUUGAACUAAAUAUGUGCAUGUAUUAAUAUGUAUACAUGCACGCA ....-----............((-(((((....)))))------)).....((((..((((..........)).))...))))......((((((((((........))))))))))... ( -27.00) >DroPer_CAF1 4938 108 + 1 AUUU-----CCAUUAUAUACGGA-UGGGUAUGCAUCCA------UCAAACAAGUUAUUGGCUUUAACACAUGCACAUUGAACUAAAUAUGUGCAUGUAUUAAUAUGUAUACAUGCACGCA ....-----............((-(((((....)))))------)).....((((..((((..........)).))...))))......((((((((((........))))))))))... ( -27.00) >consensus AUUU_____CCAUUAUAUACGGA_UGGGUAUGCAUCCA______UCAAACAAGUUAUUGGCUUUAACACAUGCACAUUGAACUAAAUAUGUGCAUGUAUUAAUAUGUAUACAUGCACGCA ........................(((((....)))))..............((...((.......))...))...............(((((((((((........))))))))))).. (-12.90 = -12.80 + -0.10)
Location | 225,898 – 226,017 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.14 |
Mean single sequence MFE | -30.10 |
Consensus MFE | -13.83 |
Energy contribution | -16.67 |
Covariance contribution | 2.84 |
Combinations/Pair | 1.12 |
Mean z-score | -3.29 |
Structure conservation index | 0.46 |
SVM decision value | 1.41 |
SVM RNA-class probability | 0.951230 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 225898 119 - 1281640 UGCUUAUGUGUACACAUCUGAAUACAUGUACGUAUUCUGUUUCAUCUGA-AGUGGAAAAGCCAAUAUCUUGCUUUGCACUAGUGCACUAAUGCUUAUUUCGUAAAUAUUGGUAUUGAAAU (((.((((((((..(....)..)))))))).)))(((..((((....))-))..)))..((((((((.((((...(((.(((....))).))).......))))))))))))........ ( -27.30) >DroPse_CAF1 3573 108 - 1 UGCGUGCAUGUAUACAUAUUAAUACAUGCACAUAUUUAGUUCAAUGUGCAUGUGUUAAAGCCAAUAACUUGUUUGA------UGGAUGCAUACCCA-UCCGUAUAUAAUGG-----AAAU ...((((((.(((.....(((((((((((((((..........)))))))))))))))...(((........))))------)).)))))).....-(((((.....))))-----)... ( -31.50) >DroPer_CAF1 4938 108 - 1 UGCGUGCAUGUAUACAUAUUAAUACAUGCACAUAUUUAGUUCAAUGUGCAUGUGUUAAAGCCAAUAACUUGUUUGA------UGGAUGCAUACCCA-UCCGUAUAUAAUGG-----AAAU ...((((((.(((.....(((((((((((((((..........)))))))))))))))...(((........))))------)).)))))).....-(((((.....))))-----)... ( -31.50) >consensus UGCGUGCAUGUAUACAUAUUAAUACAUGCACAUAUUUAGUUCAAUGUGCAUGUGUUAAAGCCAAUAACUUGUUUGA______UGGAUGCAUACCCA_UCCGUAUAUAAUGG_____AAAU ........(((((((...(((((((((((((((..........))))))))))))))).......................((((........))))...)))))))............. (-13.83 = -16.67 + 2.84)
Location | 225,938 – 226,040 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 71.27 |
Mean single sequence MFE | -27.07 |
Consensus MFE | -14.91 |
Energy contribution | -15.67 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.15 |
Mean z-score | -3.21 |
Structure conservation index | 0.55 |
SVM decision value | 4.53 |
SVM RNA-class probability | 0.999916 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 225938 102 + 1281640 AGUGCAAAGCAAGAUAUUGGCUUUUCCACU-UCAGAUGAAACAGAAUACGUACAUGUAUUCAGAUGUGUACACAUAAGCAAUAUAUGU-------UUAUAUACUUAUGU----------U .(((((...(..((...(((.....)))..-))..........(((((((....))))))).)...)))))(((((((..(((((...-------.))))).)))))))----------. ( -21.00) >DroPse_CAF1 3605 115 + 1 ----UCAAACAAGUUAUUGGCUUUAACACAUGCACAUUGAACUAAAUAUGUGCAUGUAUUAAUAUGUAUACAUGCACGCA-UAUGUGCAUUAAAGAUACAUACAUAUGUGUACUUAUUUG ----.((((.((((......(((((....((((((((((.........(((((((((((........)))))))))))))-.)))))))))))))((((((....)))))))))).)))) ( -30.10) >DroPer_CAF1 4970 115 + 1 ----UCAAACAAGUUAUUGGCUUUAACACAUGCACAUUGAACUAAAUAUGUGCAUGUAUUAAUAUGUAUACAUGCACGCA-UAUGUGCAUUAAAGAUACAUACAUAUGUGUACUUAUUUG ----.((((.((((......(((((....((((((((((.........(((((((((((........)))))))))))))-.)))))))))))))((((((....)))))))))).)))) ( -30.10) >consensus ____UCAAACAAGUUAUUGGCUUUAACACAUGCACAUUGAACUAAAUAUGUGCAUGUAUUAAUAUGUAUACAUGCACGCA_UAUGUGCAUUAAAGAUACAUACAUAUGUGUACUUAUUUG .........(((....)))...........(((((((...........(((((((((((........)))))))))))...((((((.........))))))...)))))))........ (-14.91 = -15.67 + 0.76)
Location | 225,938 – 226,040 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 71.27 |
Mean single sequence MFE | -33.37 |
Consensus MFE | -17.87 |
Energy contribution | -19.10 |
Covariance contribution | 1.23 |
Combinations/Pair | 1.17 |
Mean z-score | -5.33 |
Structure conservation index | 0.54 |
SVM decision value | 3.59 |
SVM RNA-class probability | 0.999422 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 225938 102 - 1281640 A----------ACAUAAGUAUAUAA-------ACAUAUAUUGCUUAUGUGUACACAUCUGAAUACAUGUACGUAUUCUGUUUCAUCUGA-AGUGGAAAAGCCAAUAUCUUGCUUUGCACU .----------(((((((((((((.-------...)))).)))))))))(((((............)))))((((((..((((....))-))..)))((((.........)))))))... ( -21.30) >DroPse_CAF1 3605 115 - 1 CAAAUAAGUACACAUAUGUAUGUAUCUUUAAUGCACAUA-UGCGUGCAUGUAUACAUAUUAAUACAUGCACAUAUUUAGUUCAAUGUGCAUGUGUUAAAGCCAAUAACUUGUUUGA---- (((((((((.........(((((((.....((((((...-...))))))..)))))))(((((((((((((((..........)))))))))))))))........))))))))).---- ( -39.40) >DroPer_CAF1 4970 115 - 1 CAAAUAAGUACACAUAUGUAUGUAUCUUUAAUGCACAUA-UGCGUGCAUGUAUACAUAUUAAUACAUGCACAUAUUUAGUUCAAUGUGCAUGUGUUAAAGCCAAUAACUUGUUUGA---- (((((((((.........(((((((.....((((((...-...))))))..)))))))(((((((((((((((..........)))))))))))))))........))))))))).---- ( -39.40) >consensus CAAAUAAGUACACAUAUGUAUGUAUCUUUAAUGCACAUA_UGCGUGCAUGUAUACAUAUUAAUACAUGCACAUAUUUAGUUCAAUGUGCAUGUGUUAAAGCCAAUAACUUGUUUGA____ ............(((((((((((.........(((.....)))((((((((((........))))))))))............))))))))))).......................... (-17.87 = -19.10 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:45 2006