Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 206,801 – 206,906 |
Length | 105 |
Max. P | 0.508731 |
Location | 206,801 – 206,906 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 80.95 |
Mean single sequence MFE | -30.48 |
Consensus MFE | -17.75 |
Energy contribution | -19.62 |
Covariance contribution | 1.87 |
Combinations/Pair | 1.27 |
Mean z-score | -1.75 |
Structure conservation index | 0.58 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.508731 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 206801 105 + 1281640 UUAAUCGCUCAAUCGCGUCUGCUGCGGAAAUUAGUAAAUUUCUAGCAGUAGUUAGAUAUUGAGUGCGUUCGCUAACUCGGGAUUCCGAUAUGGCCGUGUUGGGAA .....((((((((..(..((((((((((((((....))))))).)))))))...)..))))))))..(((.(((((.(((....((.....))))).)))))))) ( -35.00) >DroSec_CAF1 724 105 + 1 UUAAUCGCUCAAUCGCGUCUGCUGCGGAAAUUAGUAAAUUUCUAGCAGUGGUUAGAUAUUGCGUGCGUUCGCUAACUCGGGAUUCCGAUAUGGCCGUGUUGGCAA .....(((...(((....(..(((((((((((....))))))).))))..)...)))...))).......((((((.(((....((.....))))).)))))).. ( -32.70) >DroSim_CAF1 724 105 + 1 UUAAUCGCUCAAUCGCGUCUGCUGCGGAAAUUAGUAAAUUUCUAGCAGUGGUUAGAUAUUGCGUGCGUUCGCUAACUCGGGAUUCCGAUAUGGCCGUGUUGGCAA .....(((...(((....(..(((((((((((....))))))).))))..)...)))...))).......((((((.(((....((.....))))).)))))).. ( -32.70) >DroEre_CAF1 748 105 + 1 UCAAUCGCUCAAUAGCAUCUGCUGCGGAAAUUAGUAAAUUUCUAGCAGUAGUUAAAUAUUGAGUGCGUUCGCUAACUCGCGAUUCCGAAAUGACCGUGUUGCGAA .....(((((((((....((((((((((((((....))))))).))))))).....)))))))))...........(((((((..((.......)).))))))). ( -34.70) >DroAna_CAF1 64005 104 + 1 UUAAUCUCUCAAUAGCGUCCGCCGCAGAAAUAAGUAAAUUUCUGGCUGUUGUUAAAUAUUGAGUGCGUUCACUGACGUGUGAUUCCU-UAUUUCCAGAAUCAUGA .......((((((((((.(.(((..((((((......))))))))).).)))....))))))).(((((....)))))(((((((..-........))))))).. ( -22.70) >DroPer_CAF1 744 105 + 1 UCAAUCGUUCAAUGGCGUCCGCUGCAGAAAUUAGUAAAUUUCUGGCUGUUGUCAAAUACUGAGUGCGCUCGCUAACAUUGGACUCAGUGGAAGAAGAAUCAACAA ....((.(((..(((((.(.((..((((((((....)))))))))).).)))))..((((((((.((...........)).))))))))...)))))........ ( -25.10) >consensus UUAAUCGCUCAAUCGCGUCUGCUGCGGAAAUUAGUAAAUUUCUAGCAGUAGUUAAAUAUUGAGUGCGUUCGCUAACUCGGGAUUCCGAUAUGGCCGUGUUGGCAA .....((((((((.....((((((((((((((....))))))).)))))))......)))))))).....((((..((((....))))..))))........... (-17.75 = -19.62 + 1.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:36 2006