Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 1,169,633 – 1,169,753 |
Length | 120 |
Max. P | 0.839861 |
Location | 1,169,633 – 1,169,727 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 69.10 |
Mean single sequence MFE | -17.93 |
Consensus MFE | -9.21 |
Energy contribution | -9.27 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.35 |
Mean z-score | -1.72 |
Structure conservation index | 0.51 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.738250 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1169633 94 - 1281640 UAUCGGAAAACGUACAAUCAAUGUAAGUUUUAAAAAUGUUGUAGCACAAAAAGCACAAUAUUUUACCC-------UUUUCGAGCGGCAAGCAUUAUAAAAU----------------- ..(((((((((.((((.....)))).))))).((((((((((.((.......))))))))))))....-------...))))((.....))..........----------------- ( -18.60) >DroSec_CAF1 4042 101 - 1 UAUGGGAAAACAUACAAUCAAUGUAAGUUUUAAAAAUUUUGUGGCACAAAAAGCACAAAGUUUCACUUGAACUAAUUUCCAAGUGACAAACAUUAUAAAAU----------------- ......(((((.((((.....)))).)))))...(((((((((.(.......))))))))))(((((((..........)))))))...............----------------- ( -17.90) >DroSim_CAF1 287 101 - 1 UAUGGGAAAACAUACAAUCAAUGUAAGUUUUAAAAAUUUUGUGGCACAAAAAGCACAAAGUUUCACUUGAACUAAUUUCCAAGUGACAAGCAUUAUAAAAU----------------- ......(((((.((((.....)))).)))))...(((((((((.(.......))))))))))(((((((..........)))))))...............----------------- ( -17.90) >DroEre_CAF1 11931 114 - 1 UAUCGGAAAAUGUAAAAUAAAUGUUAGUUUAGAAAAUAUCACAGAAUAAGGAUC--C--AUGUUACUUGAAUUACUUUCCAAGCUAUAAGCAUGCUAUAUUUCAGUUUGCUUAAGAAU ..(((((((..((((..(((((....))))).......(((.((((((.(....--)--.)))).))))).)))))))))......((((((.(((.......))).)))))).)).. ( -17.30) >consensus UAUCGGAAAACAUACAAUCAAUGUAAGUUUUAAAAAUUUUGUAGCACAAAAAGCACAAAAUUUCACUUGAACUAAUUUCCAAGCGACAAGCAUUAUAAAAU_________________ ....(((((((((.......))))........((((((((((.((.......))))))))))))...........)))))..((.....))........................... ( -9.21 = -9.27 + 0.06)
Location | 1,169,654 – 1,169,753 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 81.92 |
Mean single sequence MFE | -18.70 |
Consensus MFE | -15.21 |
Energy contribution | -13.67 |
Covariance contribution | -1.55 |
Combinations/Pair | 1.18 |
Mean z-score | -1.83 |
Structure conservation index | 0.81 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.839861 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1169654 99 - 1281640 CCGUA------------AAAUCAGAUGUUUUAAUGUAAUAUCGGAAAACGUACAAUCAAUGUAAGUUUUAAAAAUGUUGUAGCACAAAAAGCACAAUAUUUUACCC-------UUUUC .....------------......((((((.......))))))(((((((.((((.....)))).))))).((((((((((.((.......))))))))))))..))-------..... ( -19.10) >DroSec_CAF1 4063 118 - 1 CCGUAUCAUAUAUCUAAUAAUCAUAUAUUUUAAUGUAAUAUGGGAAAACAUACAAUCAAUGUAAGUUUUAAAAAUUUUGUGGCACAAAAAGCACAAAGUUUCACUUGAACUAAUUUCC ((((((.((((....((((......))))...)))).))))))((((...((((.....))))(((((...((((((((((.(.......))))))))))).....)))))..)))). ( -18.50) >DroSim_CAF1 308 118 - 1 CCGUAUCAUAUAUCUAAUAAUCAUAUAUUUUAAUGUAAUAUGGGAAAACAUACAAUCAAUGUAAGUUUUAAAAAUUUUGUGGCACAAAAAGCACAAAGUUUCACUUGAACUAAUUUCC ((((((.((((....((((......))))...)))).))))))((((...((((.....))))(((((...((((((((((.(.......))))))))))).....)))))..)))). ( -18.50) >consensus CCGUAUCAUAUAUCUAAUAAUCAUAUAUUUUAAUGUAAUAUGGGAAAACAUACAAUCAAUGUAAGUUUUAAAAAUUUUGUGGCACAAAAAGCACAAAGUUUCACUUGAACUAAUUUCC .......................((((((.......))))))(((((((.((((.....)))).)))))..(((((((((.((.......)))))))))))..))............. (-15.21 = -13.67 + -1.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:53 2006