Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 1,152,335 – 1,152,455 |
Length | 120 |
Max. P | 0.758084 |
Location | 1,152,335 – 1,152,455 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.78 |
Mean single sequence MFE | -27.27 |
Consensus MFE | -16.67 |
Energy contribution | -17.12 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.41 |
Mean z-score | -2.34 |
Structure conservation index | 0.61 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.758084 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1152335 120 - 1281640 AUCGAGCCACAAUCCAAAUGGAUACUGAUACAAAAAUGUAUCCAAAAGCAAUAUAAAACCAAAUUUCAACAGCGAAUGGAGCAAUGAAGGAGAAAAAUUUCGUUUGAGCUCGGUCUGAUA (((((((((...((((..(((((((............)))))))....................(((......)))))))..(((((((........))))))))).)))))))...... ( -25.20) >DroVir_CAF1 13947 120 - 1 AUCGUGCUACUAUCCAGAUACAGAAUGAUACAAGAAUGUAGCCGAAUGCUAUGUAAAACCAUAUUUCGAUGGCGAGUGGGUUCAUAAAAGAGAAAAACUUCGUUUGAGCUCGAUCUGAUA .(((.(((((...........................))))))))..(((((..(((......)))..)))))((.((((((((.....(((......)))...)))))))).))..... ( -22.63) >DroWil_CAF1 4069 120 - 1 AACGAGCCACUAUCCAAAUGCAAAUGGAUACAAGAAUGUAUCCAAAUGCUAUAUAUACCCAUAUUUCAAUGGCAAGUGGAUUCAUAAACGAGAAAAAUUUCGUUUGAGCUCGAUCUGAUA ..(((((....(((((...(((..((((((((....))))))))..))).........((((......))))....)))))...(((((((((....))))))))).)))))........ ( -35.30) >DroMoj_CAF1 3808 120 - 1 GUCGUGCUACUAUCCAGAUACACAUGGAUACUAGAAUGUACCCAAAUGCUAUAUAAAACCAGAUUUCGAUAGCGAGCGGAUUCAUAAAUGAGAAAAACUUGGUUUGUGCACGAUCUGAAA (((((((....((((.........(((.(((......))).)))..((((((..(((......)))..))))))...))))..((((((.((......)).)))))))))))))...... ( -25.50) >DroAna_CAF1 355993 120 - 1 GCCGAGCGACUAUCCAAAUUGAUAUUGAAACGAAAAUAUAUCCAAUGGCUAUAUAAACCCAUAUUUCUAUAGCUAGUGGAUUCAUAAACGAGAAGAAUUUCGUUUGAGCUCGAUCUGAAA ..(((((((............(((((........)))))(((((.((((((((.(((......))).)))))))).))))))).(((((((((....))))))))).)))))........ ( -30.90) >DroPer_CAF1 3844 120 - 1 AUCGUGCGACUAUCCAAAUAGAGAUUGAUACAAAAAUAUACCCAAAUGCUAUAUAGAACCAUAUUUCAAUAGCAAGUGGAUUCAUAAACGAAAAAAACUUCGUUUGAGCUCGAUCUGAAA .((......((((....))))(((((((.............(((..((((((...(((......))).))))))..))).....((((((((......))))))))...))))))))).. ( -24.10) >consensus AUCGAGCCACUAUCCAAAUACAGAUUGAUACAAAAAUGUAUCCAAAUGCUAUAUAAAACCAUAUUUCAAUAGCGAGUGGAUUCAUAAACGAGAAAAACUUCGUUUGAGCUCGAUCUGAAA (((((((..................................(((..((((((..(((......)))..))))))..))).....((((((((......)))))))).)))))))...... (-16.67 = -17.12 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:51 2006