Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 189,356 – 189,476 |
Length | 120 |
Max. P | 0.706342 |
Location | 189,356 – 189,476 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.67 |
Mean single sequence MFE | -21.13 |
Consensus MFE | -18.35 |
Energy contribution | -19.39 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.11 |
Mean z-score | -1.31 |
Structure conservation index | 0.87 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.706342 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 189356 120 - 1281640 UCCGAGAUCUAGACCACAAAACACACUUUUUCCGCCCAGAGGCCUUUUUCAAACUCAGAUUAAAAAUGAAAACCUAAAGGUACCUAGGACAAACGAUAGUGUUCCUAACAAUGAUUUUGA ..(((((((..........(((((..........((.((..((((((.......(((.........)))......))))))..)).))..........))))).........))))))). ( -19.48) >DroSec_CAF1 16784 120 - 1 UCCAAGAUCAAGACCACAAAACACACUUUUUCCGCCCAGAGGCCUUUUUCAAAGUCAGCAUAAAAAUGAAAACCUAAAGGCAGCUAGGACAAACGAUAGUAUUUCUAACAAUGAUUUUGA ..((((((((.......................(((.((..((((((.......(((.........)))......))))))..)).)).)....(.(((.....))).)..)))))))). ( -21.62) >DroSim_CAF1 13545 120 - 1 UCCAAGAUCAAGACCACAAAACACACUUUUUCCGCCCAGAGGCCUUUUUCAAAGUCAGCAUAAAAAUGAAAACCUAAAGGCAGCUAGGACAAACGAUAGUAUUUCUAACAAUGAUUUUGA ..((((((((.......................(((.((..((((((.......(((.........)))......))))))..)).)).)....(.(((.....))).)..)))))))). ( -21.62) >DroEre_CAF1 18713 120 - 1 UCCAAGAUCAAGACCACAAAACACACUUUUUCCGCCAAGAGGCCUUUUUCAAAGUCAGCUAAAAAAUGAAAACCUUAAGGCAGUUAAGACAAACGAUAGUGUUUCUAGCAAUGAUUUUGA ..((((((((........((((((.........(((..((((...((((((...............))))))))))..))).(((......)))....)))))).......)))))))). ( -23.02) >DroYak_CAF1 15914 120 - 1 UCCAAGAUCAAGACCACAAAACACACUUUUUCCGCCAAGAAGCCUUUUUCAAAGUCAGCUAAACAAUGAAAACCUUAAGGCAGUUAGGACAAACGAUAGUGUAUUUAACAAUGAUUUUGA ..((((((((.......................(((...(((...((((((..((.......))..)))))).)))..))).(((((((((........))).))))))..)))))))). ( -19.90) >consensus UCCAAGAUCAAGACCACAAAACACACUUUUUCCGCCCAGAGGCCUUUUUCAAAGUCAGCUUAAAAAUGAAAACCUAAAGGCAGCUAGGACAAACGAUAGUGUUUCUAACAAUGAUUUUGA ..((((((((........((((((..........((.((..((((((.......(((.........)))......))))))..)).))..........)))))).......)))))))). (-18.35 = -19.39 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:32 2006