Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 1,140,473 – 1,140,593 |
Length | 120 |
Max. P | 0.778311 |
Location | 1,140,473 – 1,140,593 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.28 |
Mean single sequence MFE | -33.45 |
Consensus MFE | -17.81 |
Energy contribution | -17.32 |
Covariance contribution | -0.49 |
Combinations/Pair | 1.54 |
Mean z-score | -2.04 |
Structure conservation index | 0.53 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.778311 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1140473 120 + 1281640 AGAAUGUGGUUAUGAGAAGCUUUGUGAGAAAGUGGUUCAGUGUUUUUAAUUGAACCUUCGUUAUCUAUUGAAAAUGGUUCAUCAUUGUUAAGAAUCUCAUAUUUGCAAACAUCACCAAAG ....((..(.(((((((..(((.(((((((...((((((((.......)))))))).(((((.((....)).)))))))).))))....)))..))))))).)..))............. ( -30.90) >DroVir_CAF1 3276 120 + 1 AGUAUAUGAUUAUGGGAAACCUUAUGCAACAAGGGUUCAGUGUUCUUUACGGAGCCCUCGUUGUCGAUAGUAAAUGGUUCAUCGCUAUUUAAUAUCUCGUAUUUGCAAACGUCGCCAAAA .((((((((....((....))....(((((.(((((((.(((.....))).))))))).))))).((((.((((((((.....)))))))).))))))))))..)).............. ( -35.50) >DroGri_CAF1 5130 120 + 1 AGGAUGUGAUUGUGGGAGAUCUUGUGAGACAAGGGCUCCGUAUUCUUGAUGGAGCCUUCGUUGUCGAUUGUAAACGGCUCAUCGCUAUUCAAUAUAUCGUAUUUGCAUACAUCCCCAAAG .(((((((..((..((.(((....(((((((((((((((((.......)))))))))...)))))..........(((.....)))..)))....)))...))..)))))))))...... ( -36.00) >DroWil_CAF1 3360 120 + 1 AGAAUGUGAUUAUGGGAUGCCUUGUGCGAAAGUGGUUCGGUGUUCUUGAUCGACCCCUCGUUGUCAAUGGCAAAGGGCUCAUCAUUGUUGAGUAUCUCAUAUUUGCAGACGUCCCCAAAC .(..((..(.(((((((((((....((((..(((((((..(((..((((.((((.....))))))))..)))..)))).)))..)))).).)))))))))).)..))..).......... ( -36.30) >DroMoj_CAF1 4570 120 + 1 AAAAUGUGAUUGUGGGAUACCUUAUGAGAGAGAGGCUCUUUGUUUUUGAUUGAGCCUUCGUUGUCGAUUGUGAAUGGUUCAUCACUAUUUAGUAUCUCAUAUUUGCAAACAUCUCCAAAC ....((..(.((((((((((....(((.((.(((((((.............)))))))..)).)))....((((((((.....)))))))))))))))))).)..))............. ( -33.62) >DroAna_CAF1 45115 120 + 1 AAAAUGUGGUUAUGUGAUGCUUUAUGCGAAAGUGGUUCAGUGUUUCUGAUUGAGCCCUCGUUAUCGAUUGAAAACGGUUCAUCAUUGUUAAGAAUCUCAUAUUUGCAAACAUCACCAAAA ......((((.((((..(((..((((.((.((.((((((((.......))))))))))((((.((....)).))))..................)).))))...))).)))).))))... ( -28.40) >consensus AGAAUGUGAUUAUGGGAUACCUUAUGAGAAAGUGGUUCAGUGUUCUUGAUUGAGCCCUCGUUGUCGAUUGUAAAUGGUUCAUCACUAUUAAGUAUCUCAUAUUUGCAAACAUCACCAAAA ....(((((.(((((((................((((((((.......))))))))................((((((.....)))))).....))))))).)))))............. (-17.81 = -17.32 + -0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:47 2006