Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 1,118,732 – 1,118,851 |
Length | 119 |
Max. P | 0.650025 |
Location | 1,118,732 – 1,118,851 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.46 |
Mean single sequence MFE | -25.65 |
Consensus MFE | -23.79 |
Energy contribution | -23.10 |
Covariance contribution | -0.69 |
Combinations/Pair | 1.19 |
Mean z-score | -1.43 |
Structure conservation index | 0.93 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.650025 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1118732 119 - 1281640 UCGUUUGUCUACUUCUUUGCAUAAGUAAAGUGGACCGAGCACUCUCGUUGCUGUGGCUUAUUUUGUAGGUAUGGUCUUCUUUAGUCAAGCCAUUGACAUUAUU-UUUCUUUUAUUUAAAA ..((((((((((((..((.....))..))))))).)))))......(((...(((((((...(((.(((........))).)))..))))))).)))......-................ ( -23.40) >DroSec_CAF1 30670 119 - 1 UCGUUUGUCUACGUCUUUGCAUAAGUAAAGUGGACCAAGCACUCUCGUUGCUGUGGCUUAUUAUGUAGGUAUGGUCUUCUUUAGUCAAGCCAUUGACAUUAUU-UUUCUUUUAUUUAAAA ..((((((((((...(((((....)))))))))).)))))......(((...(((((((((((...(((........))).)))).))))))).)))......-................ ( -24.20) >DroEre_CAF1 31304 120 - 1 UCGUUUGUCUACUUCUUUGCAUAAGUAAAGUGGACCGAGCACUCUCGUUGCUGUGGCUUAUUCAGUAGAUAUGGUCUUCUUUUGGCCAGCCAUUGACAUUAUUUUUUCUUUUAUUUAAAA ..((((((((((((..((.....))..))))))).)))))......(((...(((((....((....))..(((((.......)))))))))).)))....................... ( -25.90) >DroYak_CAF1 23216 120 - 1 UCGUUUGUCUACUUCUUUGCAUAAGUAAAGUGGACGGAACACUCUCGUUGCUGUGGCUUAUUCAAAAGAUAUGGUCUUCUUUUGGCCAGCCAUUGACAUUAUUUUUUCUUUUAUUUAAAA ..((((((((((((..((.....))..)))))))).))))......(((...((((((...((((((((........))))))))..)))))).)))....................... ( -29.10) >consensus UCGUUUGUCUACUUCUUUGCAUAAGUAAAGUGGACCGAGCACUCUCGUUGCUGUGGCUUAUUCAGUAGAUAUGGUCUUCUUUAGGCAAGCCAUUGACAUUAUU_UUUCUUUUAUUUAAAA ..((((((((((...(((((....))))))))))).))))......(((...(((((((...(((.(((........))).)))..))))))).)))....................... (-23.79 = -23.10 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:45 2006