Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 1,118,212 – 1,118,310 |
Length | 98 |
Max. P | 0.928011 |
Location | 1,118,212 – 1,118,310 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 95.24 |
Mean single sequence MFE | -28.70 |
Consensus MFE | -25.48 |
Energy contribution | -25.37 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -4.78 |
Structure conservation index | 0.89 |
SVM decision value | 1.19 |
SVM RNA-class probability | 0.928011 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1118212 98 + 1281640 GGAGUUUAGUGUUUUUUUGGCUUUUCAACAUAAUACAAUUAAUUUAUAGAGAGUAUUAUAAAUUAAUUGUUAUAUGUUGAAAGCCCAAAUUAUGCCAG ........((((..(((.((((((.(((((((..(((((((((((((((......)))))))))))))))..))))))))))))).)))..))))... ( -31.50) >DroSec_CAF1 30150 98 + 1 GGAGUUUAGUGCUUCUUUUGCUUUUCAACAUAAUACAAUUCAUUUAUAGAGAGUAUUAUAAAUUAAUUGUAAUAUGUUGAAAGCUCAAAUUGUGCCAG (((((.....)))))....(((((.(((((((.(((((((.((((((((......)))))))).))))))).)))))))))))).............. ( -27.30) >DroSim_CAF1 17748 98 + 1 GGAGUUUAGUGCUUCUUUUGCUUUUCAACAUAAUACAAUUCAUUUAUAGAGAGUAUUAUAAAUUAAUUGUAAUAUGUUGAAAGCUCAAAUUGUGCCAG (((((.....)))))....(((((.(((((((.(((((((.((((((((......)))))))).))))))).)))))))))))).............. ( -27.30) >consensus GGAGUUUAGUGCUUCUUUUGCUUUUCAACAUAAUACAAUUCAUUUAUAGAGAGUAUUAUAAAUUAAUUGUAAUAUGUUGAAAGCUCAAAUUGUGCCAG ........(..(.......(((((.(((((((.(((((((.((((((((......)))))))).))))))).)))))))))))).......)..)... (-25.48 = -25.37 + -0.11)
Location | 1,118,212 – 1,118,310 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 95.24 |
Mean single sequence MFE | -26.60 |
Consensus MFE | -23.30 |
Energy contribution | -23.63 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -6.22 |
Structure conservation index | 0.88 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.802340 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1118212 98 - 1281640 CUGGCAUAAUUUGGGCUUUCAACAUAUAACAAUUAAUUUAUAAUACUCUCUAUAAAUUAAUUGUAUUAUGUUGAAAAGCCAAAAAAACACUAAACUCC .............(((((((((((((..((((((((((((((........))))))))))))))..))))))).)))))).................. ( -28.80) >DroSec_CAF1 30150 98 - 1 CUGGCACAAUUUGAGCUUUCAACAUAUUACAAUUAAUUUAUAAUACUCUCUAUAAAUGAAUUGUAUUAUGUUGAAAAGCAAAAGAAGCACUAAACUCC ...((....(((..((((((((((((.(((((((.(((((((........))))))).))))))).))))))).))))).)))...)).......... ( -25.50) >DroSim_CAF1 17748 98 - 1 CUGGCACAAUUUGAGCUUUCAACAUAUUACAAUUAAUUUAUAAUACUCUCUAUAAAUGAAUUGUAUUAUGUUGAAAAGCAAAAGAAGCACUAAACUCC ...((....(((..((((((((((((.(((((((.(((((((........))))))).))))))).))))))).))))).)))...)).......... ( -25.50) >consensus CUGGCACAAUUUGAGCUUUCAACAUAUUACAAUUAAUUUAUAAUACUCUCUAUAAAUGAAUUGUAUUAUGUUGAAAAGCAAAAGAAGCACUAAACUCC ..............((((((((((((.(((((((.(((((((........))))))).))))))).))))))).)))))................... (-23.30 = -23.63 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:44 2006