Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 1,116,379 – 1,116,573 |
Length | 194 |
Max. P | 0.842382 |
Location | 1,116,379 – 1,116,496 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.61 |
Mean single sequence MFE | -22.02 |
Consensus MFE | -17.01 |
Energy contribution | -16.20 |
Covariance contribution | -0.81 |
Combinations/Pair | 1.24 |
Mean z-score | -1.38 |
Structure conservation index | 0.77 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1116379 117 + 1281640 AGUUAAUGAUCGUACAACCUCAAGAUCUUAUUCACAUUGAAAUUGAAGCACUAUUGGUGUACGAUUACAACGCUC-ACAUUAUCAGGAUAUA--AAAAAAAGGUGAUAGUAAUUCAGCAC .(((..((((((((((.((...((..(((.(((.....)))....)))..))...)))))))))))).)))(((.-..(((((((.......--.........))))))).....))).. ( -20.89) >DroSec_CAF1 27791 117 + 1 AGUUGAUGAUCGUACAACCUCAAGAUCUUAUUUACAUUCAAAUUGAAGCACAAUUGGUGUACGAUUACAACGCUC-ACAUUAUAAGGAUAUA--AAAAAAAUGUGAUAGUAAUCCAGCAC .((((.((((((((((.((....((............)).(((((.....)))))))))))))))))))))..((-(((((...........--.....))))))).............. ( -23.99) >DroSim_CAF1 15457 117 + 1 AGUUGAUGAUCGUACAACCUCAAGAUCUUAUUUACAUUCAAAUUGAAGCACAAUUGGUGUACGAUUACAACGCUC-ACAUUAUAAGGAUAUA--AAAAAAAUGUGAUAGUAAUCCAGCAC .((((.((((((((((.((....((............)).(((((.....)))))))))))))))))))))..((-(((((...........--.....))))))).............. ( -23.99) >DroEre_CAF1 28709 119 + 1 AAUUGAUGAUUGUGCGACAUCAAGAUCUGAUUCGUAUUCAAAUUGAAGUACAAUUGGUGUACGAUUACAACGCUCCUUAUAAUCACGAUAUAUAAAA-AAAUGUUAUAGUAACUCAGCAC .((((.((((((((((..((((.....))))((((((...(((((.....)))))...))))))......))).....)))))))))))........-...................... ( -19.20) >consensus AGUUGAUGAUCGUACAACCUCAAGAUCUUAUUCACAUUCAAAUUGAAGCACAAUUGGUGUACGAUUACAACGCUC_ACAUUAUAAGGAUAUA__AAAAAAAUGUGAUAGUAAUCCAGCAC .((((.((((((((((...((((.......((((.........))))......))))))))))))))))))(((..((((((((.................)))))).)).....))).. (-17.01 = -16.20 + -0.81)
Location | 1,116,458 – 1,116,573 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.99 |
Mean single sequence MFE | -29.98 |
Consensus MFE | -20.17 |
Energy contribution | -21.05 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.17 |
Mean z-score | -2.72 |
Structure conservation index | 0.67 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.842382 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1116458 115 - 1281640 GUGGUUUCUGGCUUCACCCGACUUACGUUGUACUCACGGAGUAAUCUGUGUUCCCAUAUAUUUGUGGUUAC--AAAGUC-GUGCUGAAUUACUAUCACCUUUUUUU--UAUAUCCUGAUA (((((...(((.((((.(((((((....((((..((((((....))))))...(((((....))))).)))--))))))-).).)))))))..)))))........--............ ( -26.60) >DroSec_CAF1 27870 116 - 1 GUGGUUUCUGGCUUCAGCCGACUUAAGUUGUACUCACGGAGUAAUCUUUGUUCCCAUAUAUUUGUGGUUAC--AAAGUCGGUGCUGGAUUACUAUCACAUUUUUUU--UAUAUCCUUAUA (((((.((..((....(((((((((((...(((((...)))))..)))(((..(((((....)))))..))--)))))))))))..)).....)))))........--............ ( -34.50) >DroSim_CAF1 15536 116 - 1 GUGGUUUCUGGCUUCAGCCGACUUAAAUUGUACUCACGGAGUAAUCUUUGUUCCCAUAUAUUUGUGGUAAC--AAAGUCGGUGCUGGAUUACUAUCACAUUUUUUU--UAUAUCCUUAUA (((((.((..((....((((((((......(((((...))))).....((((.(((((....))))).)))--)))))))))))..)).....)))))........--............ ( -33.20) >DroEre_CAF1 28789 119 - 1 GUGGUUUCUGCCUUCACUCGAUUUAAGUUGUACUAAUGGAGUAAUCUGUGUUCCCAUACAUUUGUGGUUACACCGAUUCGGUGCUGAGUUACUAUAACAUUU-UUUUAUAUAUCGUGAUU ..(((....))).((((.........((((((.((((..(((((((.((((..(((((....)))))..)))).)))....))))..)))).))))))((..-....)).....)))).. ( -25.60) >consensus GUGGUUUCUGGCUUCACCCGACUUAAGUUGUACUCACGGAGUAAUCUGUGUUCCCAUAUAUUUGUGGUUAC__AAAGUCGGUGCUGAAUUACUAUCACAUUUUUUU__UAUAUCCUGAUA (((((.......((((((((((((...........(((((....)))))((..(((((....)))))..))...)))))))..))))).....)))))...................... (-20.17 = -21.05 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:41 2006