Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 1,113,452 – 1,113,601 |
Length | 149 |
Max. P | 0.976391 |
Location | 1,113,452 – 1,113,571 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.43 |
Mean single sequence MFE | -24.83 |
Consensus MFE | -23.82 |
Energy contribution | -23.60 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -1.40 |
Structure conservation index | 0.96 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1113452 119 + 1281640 AUGGUAAUUCCAGUUGCAACCUUCCAAAACUAAAGAACAAUAGCAAUUGCAGA-AAGAAGAGAAGGGAACAUUUUAAACAAGUUCACAAGUGCAAUGCACUUGGGCCGCGAUUGAAAACC ..(((..((.(((((((..((((((....(....).......((....))...-.....).)))))((((...........)))).(((((((...)))))))....))))))).))))) ( -26.20) >DroSec_CAF1 26398 119 + 1 AUGGUAAUUCCAGUUGCAACCGUCCAAAACUUAAGAACAAUAGCGAUUGCAAA-AAGAAGAGAAGGGGACAUUUAAAACAAGUUCACAAGUGCAAUGUACUUGGACCGCGAUUGAAAACC ..(((..((.(((((((....((((....(((..........((....))...-........))).))))...........(.((.(((((((...))))))))).)))))))).))))) ( -24.20) >DroSim_CAF1 14032 120 + 1 AUGGUAAUUCCAGUUGCAAGCGUCCAAAACUUAAGAACAAUAGCGAUUGCAAAAAAGAAGAGAAGGGGACAUUUAAAACAAGUUCACAAGUGCAAUGUACUUGGACCGCGAUUGAAAACC ..(((..((.(((((((..(.((((.........((((....((....))..............(....)...........))))..((((((...)))))))))))))))))).))))) ( -24.10) >consensus AUGGUAAUUCCAGUUGCAACCGUCCAAAACUUAAGAACAAUAGCGAUUGCAAA_AAGAAGAGAAGGGGACAUUUAAAACAAGUUCACAAGUGCAAUGUACUUGGACCGCGAUUGAAAACC ..(((..((.(((((((.................((((....((....))..............(....)...........)))).(((((((...)))))))....))))))).))))) (-23.82 = -23.60 + -0.22)
Location | 1,113,492 – 1,113,601 |
---|---|
Length | 109 |
Sequences | 3 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 95.14 |
Mean single sequence MFE | -31.30 |
Consensus MFE | -28.65 |
Energy contribution | -29.10 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.03 |
Mean z-score | -3.21 |
Structure conservation index | 0.92 |
SVM decision value | 1.77 |
SVM RNA-class probability | 0.976391 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1113492 109 - 1281640 ACUAGCAAAAUCUUGGAAGGGGAUAUAAAAGGUUUUCAAUCGCGGCCCAAGUGCAUUGCACUUGUGAACUUGUUUAAAAUGUUCCCUUCUCUUCUU-UCUGCAAUUGCUA ....(((.((....((((((((((((....((((.........))))(((((((...)))))))..............)))))))))))).....)-).)))........ ( -28.30) >DroSec_CAF1 26438 109 - 1 ACCAGCAAAAUCUUGGAAGGGGAUAUAAAAGGUUUUCAAUCGCGGUCCAAGUACAUUGCACUUGUGAACUUGUUUUAAAUGUCCCCUUCUCUUCUU-UUUGCAAUCGCUA ....((((((....((((((((((((...((((((.(((..(((((........)))))..))).)))))).......)))))))))))).....)-)))))........ ( -33.10) >DroSim_CAF1 14072 110 - 1 ACUAGCAAAAUCUUGGAAGGGGAUAUAAAAGGUUUUCAAUCGCGGUCCAAGUACAUUGCACUUGUGAACUUGUUUUAAAUGUCCCCUUCUCUUCUUUUUUGCAAUCGCUA ....((((((....((((((((((((...((((((.(((..(((((........)))))..))).)))))).......))))))))))))......))))))........ ( -32.50) >consensus ACUAGCAAAAUCUUGGAAGGGGAUAUAAAAGGUUUUCAAUCGCGGUCCAAGUACAUUGCACUUGUGAACUUGUUUUAAAUGUCCCCUUCUCUUCUU_UUUGCAAUCGCUA ....(((((.....((((((((((((...((((((.(((..(((((........)))))..))).)))))).......)))))))))))).......)))))........ (-28.65 = -29.10 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:38 2006