Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 1,108,171 – 1,108,284 |
Length | 113 |
Max. P | 0.584842 |
Location | 1,108,171 – 1,108,284 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.05 |
Mean single sequence MFE | -24.77 |
Consensus MFE | -13.57 |
Energy contribution | -14.45 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.24 |
Mean z-score | -2.23 |
Structure conservation index | 0.55 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.584842 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1108171 113 - 1281640 ---UAUUGUUACAUUGAGUGACCUGCAUUCUACAGGUUGACAAGCGAACAAAUAUUUAUACAUACAUAUUU----GAAAAUGUGUAAUAUACGUUUGUAAAUAAAUCGUUUAAUAUACAU ---..(((((...(((..(((((((.......))))))).)))...)))))(((((...((.....(((((----(.((((((((...)))))))).))))))....))..))))).... ( -19.70) >DroSec_CAF1 21414 113 - 1 ---UAUUAUUACAUUGAGUGACCUGCAUUCUACAGGUUGGAAAGCGAACAAAUACUUAUACAUACACAUAU----GAAAAUGUGUAAUAUACGUUUGUAAAUAAAUCAUUUAAUAUACAU ---.........(((((((((..(((.(((((.....))))).))).((((((...((((..(((((((..----....))))))).)))).)))))).......)))))))))...... ( -22.20) >DroEre_CAF1 21345 120 - 1 UUGUAUUAUAACAUUGAGUGACCUGCAUUCUACAGGUUGACAAGAGUCCAAAUACUUGUACAUACAUAUGUAUAAGGAAAUGUGUGAAGUAUGUUUAUAGAUAAAUCAUAUAAUAUAGAC (((((((((((((((....((((((.......))))))(((....)))......(((((((((....)))))))))..))))).(((..(((.(....).)))..))))))))))))).. ( -26.60) >DroYak_CAF1 12253 117 - 1 UUGUAUUAUAACAUUGAGUGACCUGCAUUCUACAGGUUGACAAGCGACCAAAUACUUGUAUAUACAUAUAUCUAA---AAAGUGUGAUGUGCGUUUGUAGACAACUCAUAUAAUAUAGAU ((((((((((....(((((...(((((..(....(((((.....)))))........((((((.(((((......---...))))))))))))..)))))...))))))))))))))).. ( -30.60) >consensus ___UAUUAUAACAUUGAGUGACCUGCAUUCUACAGGUUGACAAGCGAACAAAUACUUAUACAUACAUAUAU____GAAAAUGUGUAAUAUACGUUUGUAAAUAAAUCAUAUAAUAUACAU ............(((((((((((((.......))))...............(((..(((((((((((((..........))))))).))))))..))).......)))))))))...... (-13.57 = -14.45 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:30 2006