Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 1,106,838 – 1,106,984 |
Length | 146 |
Max. P | 0.909450 |
Location | 1,106,838 – 1,106,944 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.93 |
Mean single sequence MFE | -26.40 |
Consensus MFE | -26.39 |
Energy contribution | -26.32 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.12 |
Mean z-score | -1.48 |
Structure conservation index | 1.00 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.888378 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1106838 106 - 1281640 UGCAAGCCAACCGAGACAGCUUUUCCGCCGUUUCUUUUGGUUGUUUUUGGCUGCU------AGGUACUGGAAAUGCUACUGCUGUAUAUAUUAUGUUAUGUACUAUU--------UAUUU .(((((((((..(((((.((......)).)))))..)))))).....((((..((------((...))))....)))).))).(((((((......)))))))....--------..... ( -26.30) >DroSec_CAF1 19682 112 - 1 UGCAAGCCAACCGAGACUGCUUUUCCGCCGUUUCUUUUGGUUGUUUUUGGCUGCUAACUCUAGGUACUGAAAAUGCCACUGCUGUAUAUAUUAUGUUUUGUGCUAUA--------UAUUU .(((((((((..(((((.((......)).)))))..))))))(((((..(.((((.......)))))..))))).....))).(((((((.(((.....))).))))--------))).. ( -25.80) >DroEre_CAF1 19996 120 - 1 UGCAAGCCAACCGAGACAGCUUUUCCGCCGUUUCUUUUGGUUGUUUUUGGCUACUAGCUCUAGGUACUGGAAAUGCCAUUGCUGUAUUUAUUAUGUUAUAUACUGUAACUAUCUUUGUUA .((.((((((..(((((.((......)).)))))..))))))(((((..(.((((.......)))))..)))))))..((((.((((.((......)).)))).))))............ ( -26.30) >DroYak_CAF1 11022 112 - 1 UGCAAGCCAACCGAGACAGCUUUUCCGCCGUUUCUUUUGGUUGUUUUUGGCUGCUAGCUCUAGGUACUGGAAAUGCCAUUGCUGUAUCUAUUAUGUUAUAUACUGCA--------UAUUU .((.((((((..(((((.((......)).)))))..))))))(((((..(.((((.......)))))..)))))))...(((.((((.((......)).)))).)))--------..... ( -27.20) >consensus UGCAAGCCAACCGAGACAGCUUUUCCGCCGUUUCUUUUGGUUGUUUUUGGCUGCUAGCUCUAGGUACUGGAAAUGCCACUGCUGUAUAUAUUAUGUUAUAUACUAUA________UAUUU .(((((((((..(((((.((......)).)))))..))))))(((((..(.((((.......)))))..))))).....))).(((((((......)))))))................. (-26.39 = -26.32 + -0.06)
Location | 1,106,870 – 1,106,984 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.00 |
Mean single sequence MFE | -36.08 |
Consensus MFE | -33.38 |
Energy contribution | -33.25 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.06 |
Mean z-score | -1.94 |
Structure conservation index | 0.93 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.909450 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1106870 114 - 1281640 AAUUCGGUAUUUCAAUCGUGGCUCGUGGCUUUUCACGGUCUGCAAGCCAACCGAGACAGCUUUUCCGCCGUUUCUUUUGGUUGUUUUUGGCUGCU------AGGUACUGGAAAUGCUACU .....((((((((...(.((((.(((((....)))))(((.((((.((((..(((((.((......)).)))))..))))))))....))).)))------).).....))))))))... ( -34.70) >DroSec_CAF1 19714 120 - 1 AAUUCGGUAUUUCAAUCGUGGCUCGUGGCUUUUCACGGUCUGCAAGCCAACCGAGACUGCUUUUCCGCCGUUUCUUUUGGUUGUUUUUGGCUGCUAACUCUAGGUACUGAAAAUGCCACU ....((((......))))......((((((((((((((((.((((.((((..(((((.((......)).)))))..))))))))....)))))(((....)))....)))))).))))). ( -34.10) >DroEre_CAF1 20036 120 - 1 AAUUCGGUAUUUCAAUCGUGGCUCGUGGCUUUUCACGGUCUGCAAGCCAACCGAGACAGCUUUUCCGCCGUUUCUUUUGGUUGUUUUUGGCUACUAGCUCUAGGUACUGGAAAUGCCAUU .....((((((((.(((..((((.((((((....((.(....).((((((..(((((.((......)).)))))..))))))))....)))))).))))...)))....))))))))... ( -37.70) >DroYak_CAF1 11054 120 - 1 AAUUCGGUAUUUCAAUCGUGGCUCGUGGCUUUUCACGGUCUGCAAGCCAACCGAGACAGCUUUUCCGCCGUUUCUUUUGGUUGUUUUUGGCUGCUAGCUCUAGGUACUGGAAAUGCCAUU .....((((((((....(((.((.(.((((.....(((((.((((.((((..(((((.((......)).)))))..))))))))....)))))..))))).)).)))..))))))))... ( -37.80) >consensus AAUUCGGUAUUUCAAUCGUGGCUCGUGGCUUUUCACGGUCUGCAAGCCAACCGAGACAGCUUUUCCGCCGUUUCUUUUGGUUGUUUUUGGCUGCUAGCUCUAGGUACUGGAAAUGCCACU .....((((((((....(..(..(((((....)))))..)..).((((((..(((((.((......)).)))))..))))))......((.((((.......)))))).))))))))... (-33.38 = -33.25 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:29 2006