Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 188,529 – 188,649 |
Length | 120 |
Max. P | 0.714627 |
Location | 188,529 – 188,649 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.25 |
Mean single sequence MFE | -29.16 |
Consensus MFE | -24.72 |
Energy contribution | -24.96 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.11 |
Mean z-score | -1.38 |
Structure conservation index | 0.85 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.714627 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 188529 120 + 1281640 ACGUGGAACUUAUCCCGUUUGAACCCAAUACUACUGCAAAGUCAUUUGGACCUACGAUCUCGGUGCUUGACUUAGCAGUAACAAUGCUUUUGUACUCAGUUAUAUGUCCGCUUACUACAG ..(((((...(((..(...............((((((.((((((...(.(((.........))).).)))))).))))))((((.....)))).....)..)))..)))))......... ( -29.10) >DroSec_CAF1 15957 120 + 1 AUGUGGAACUCAUCCCGUUUGCGCCCAAUACUACUGCAAAGUCAUUUGGACCUACGAUCUCGGUGCUUGACUUAGCAGUAACAAUGUUUUUGUACUCAGUUACAUGUCCGCUUACUACAG .((((((.....))).((..(((..(.....((((((.((((((...(.(((.........))).).)))))).))))))...((((..(((....)))..)))))..)))..)).))). ( -31.50) >DroSim_CAF1 12718 120 + 1 AUGUGGAACUCAUCCCGUUUGCGCCCAAUACUACUGCAAAGUCAUUUGGACCUACGAUCUCGGUGCUUGACUUAGCAGUAACAAUGUUUUUGUACUCAGUUACAUGUCCGCUUACUACAG .((((((.....))).((..(((..(.....((((((.((((((...(.(((.........))).).)))))).))))))...((((..(((....)))..)))))..)))..)).))). ( -31.50) >DroEre_CAF1 17888 120 + 1 AUGUGGAACUCAUCCCGUUUGUACCUAAUACUACUGCAAACUCAUUUGGACCCACGAUCUCAGUGCUUGAUUUGGCAGUGACAAUGUUUUUGUACUCAGUUACAUGUCCGCUUACUACAG .(((((..........(((((((...........)))))))......((((........(((.((((......)))).)))..((((..(((....)))..)))))))).....))))). ( -27.20) >DroYak_CAF1 15078 120 + 1 AUGUGGAACUGAUCCCGUUUGUACCUAAUACUACUGCAAACUCAUUUGGACCCACAAUCUCGGUGCUUGAUUUGGCAGUGACAAUGUUUUUGUACUCAGUUACAUGUCCGUUUACUACAG .(((((..........(((((((...........)))))))......((((........(((.((((......)))).)))..((((..(((....)))..)))))))).....))))). ( -26.50) >consensus AUGUGGAACUCAUCCCGUUUGCACCCAAUACUACUGCAAAGUCAUUUGGACCUACGAUCUCGGUGCUUGACUUAGCAGUAACAAUGUUUUUGUACUCAGUUACAUGUCCGCUUACUACAG ..(((((........................((((((.((((((...(.(((.........))).).)))))).))))))...((((..(((....)))..)))).)))))......... (-24.72 = -24.96 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:30 2006