Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 1,102,421 – 1,102,581 |
Length | 160 |
Max. P | 0.990532 |
Location | 1,102,421 – 1,102,541 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -31.91 |
Consensus MFE | -26.10 |
Energy contribution | -26.34 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -1.64 |
Structure conservation index | 0.82 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.825915 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1102421 120 - 1281640 GAGCCAAUCUUAUUUGGCUUCUAAUUGGACUCGUCUGGUUUGAAGUCAAACUUAUAAAUUGCAAUGGGAUCAGCAGUAGUAAUUAUUAUGCUUCGAAUUUGGAGAGUCACAAGGGCUGCA (((((((......)))))))....((((((((..(..(((((((((...........(((((..........)))))............)))))))))..)..))))).)))........ ( -31.80) >DroSec_CAF1 16185 120 - 1 GAGCCAAUCUUAUUUGGCUUCUAAUCGGACUCGUCUGGUUUGAAGUCAAGCUUAUAAAUUGCAAUGGGAUCAGCAGUAGUAAUUAUUAUGCUUCGAAUUUGGAGAGUCACAAGGGCUGCA ..((..(((((((((((((((.(((((((....))))))).))))))).((.........))))))))))..)).(((((..........(((((....)))))..........))))). ( -34.85) >DroSim_CAF1 6819 119 - 1 GAGCCAAUCUUAUUUGGCUUCUAAUUGGACUCGUCUGGU-UGAAGUCAAGCUUAUAAAUUGCAAUGGGAUCAGCAGUAGUAAUUAUUAUGCUUCGAAUUUGGAGAGUCACAAGGGCUGCA ..((..(((((((((((((((.(((..((....))..))-)))))))).((.........))))))))))..)).(((((..........(((((....)))))..........))))). ( -32.75) >DroEre_CAF1 15694 120 - 1 GAGCUAAUCUUAUUUGGCUUCUCAUUGGACUUGUCUGGUUUGAAGUCAAAUUAAUAAAUUGCAAUGGGAUAAGCAGUAGUAAUUACUAUACUUCUAAUUUGGAGACACACAAGGGCUGCA ..(((.(((((((((((((((..((..((....))..))..)))))))((((....))))..)))))))).))).(((((..........((((......))))..........))))). ( -31.05) >DroYak_CAF1 7682 120 - 1 GAGCCAAUCUUAUAUGGCUUCUCAUUGGACUCGUCUGGUUUGAAGUCAAACUAAUAAAUUGCAAUGGAAUCAGCAGUAGUAAUUACUAUGCUUCGAAUUUGGAGACACAUAAGGGCUGCA .((((...(((((.((.((((((((((.(......(((((((....)))))))......).))))))....((((.((((....))))))))........)))).)).)))))))))... ( -29.10) >consensus GAGCCAAUCUUAUUUGGCUUCUAAUUGGACUCGUCUGGUUUGAAGUCAAACUUAUAAAUUGCAAUGGGAUCAGCAGUAGUAAUUAUUAUGCUUCGAAUUUGGAGAGUCACAAGGGCUGCA ..((..(((((((((((((((..((((((....))))))..)))))))..............))))))))..)).(((((..........((((......))))..........))))). (-26.10 = -26.34 + 0.24)
Location | 1,102,461 – 1,102,581 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.33 |
Mean single sequence MFE | -30.56 |
Consensus MFE | -27.70 |
Energy contribution | -27.38 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.12 |
Mean z-score | -1.78 |
Structure conservation index | 0.91 |
SVM decision value | 2.22 |
SVM RNA-class probability | 0.990532 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1102461 120 - 1281640 CAUGGUUCAAUGCGUAACUGUUCAAAGAUUAAACGCAAUAGAGCCAAUCUUAUUUGGCUUCUAAUUGGACUCGUCUGGUUUGAAGUCAAACUUAUAAAUUGCAAUGGGAUCAGCAGUAGU ..((((((..(((((....(((....)))...)))))...))))))......(((((((((.(((..((....))..))).))))))))).......(((((..........)))))... ( -32.10) >DroSec_CAF1 16225 120 - 1 CAUGGUUCAAUGCGUAACUGUUCAAAGAUUAAACGCAAUAGAGCCAAUCUUAUUUGGCUUCUAAUCGGACUCGUCUGGUUUGAAGUCAAGCUUAUAAAUUGCAAUGGGAUCAGCAGUAGU ..((((((..(((((....(((....)))...)))))...))))))(((((((((((((((.(((((((....))))))).))))))).((.........)))))))))).......... ( -34.20) >DroSim_CAF1 6859 119 - 1 CAUGGUUCAAUGCGUAACUGUUCAAAGAUUAAACGCAAUAGAGCCAAUCUUAUUUGGCUUCUAAUUGGACUCGUCUGGU-UGAAGUCAAGCUUAUAAAUUGCAAUGGGAUCAGCAGUAGU ..((((((..(((((....(((....)))...)))))...))))))(((((((((((((((.(((..((....))..))-)))))))).((.........)))))))))).......... ( -32.10) >DroEre_CAF1 15734 120 - 1 CAAGGUUCAAUGCGUAACUGUUCAAAGAUUAAACGCAAUAGAGCUAAUCUUAUUUGGCUUCUCAUUGGACUUGUCUGGUUUGAAGUCAAAUUAAUAAAUUGCAAUGGGAUAAGCAGUAGU ...(((((..(((((....(((....)))...)))))...)))))......((((((((((..((..((....))..))..))))))))))......(((((..........)))))... ( -28.30) >DroYak_CAF1 7722 120 - 1 CAAGGCUCAGUACGUAACUGUUCAAAGAUUAAACGCAAUAGAGCCAAUCUUAUAUGGCUUCUCAUUGGACUCGUCUGGUUUGAAGUCAAACUAAUAAAUUGCAAUGGAAUCAGCAGUAGU ...(((((.((.(((....(((....)))...)))..)).))))).........(((((((..((..((....))..))..))))))).........(((((..........)))))... ( -26.10) >consensus CAUGGUUCAAUGCGUAACUGUUCAAAGAUUAAACGCAAUAGAGCCAAUCUUAUUUGGCUUCUAAUUGGACUCGUCUGGUUUGAAGUCAAACUUAUAAAUUGCAAUGGGAUCAGCAGUAGU ...(((((..(((((....(((....)))...)))))...))))).......(((((((((..((((((....))))))..))))))))).......(((((..........)))))... (-27.70 = -27.38 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:16 2006