Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 1,098,083 – 1,098,203 |
Length | 120 |
Max. P | 0.901115 |
Location | 1,098,083 – 1,098,203 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.08 |
Mean single sequence MFE | -21.94 |
Consensus MFE | -17.42 |
Energy contribution | -17.98 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.05 |
Mean z-score | -1.93 |
Structure conservation index | 0.79 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.901115 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1098083 120 + 1281640 AAAAGUAAUUUUGUUAUAGAAUUAGGUAAAAUAAGAUUGUGUUAUUACUUACGCUAAGGGCAACCACACUCAUCAACAACCAUUUUUGGCAAGUCUCGUUUAAUAAUACCAUCAUCACCA .....((((((((...))))))))(((.......(((.(((((((((...(((....((....))..............(((....))).......))).))))))))).)))...))). ( -19.50) >DroSec_CAF1 12800 120 + 1 AAAAGAAAUUUUGUUUUAGAAUUAGGUAAAAUAAAAUUGUGGUAUUACUUACGCUAAGGGCAACCACACUCAUCAACAACCAUUUUUGGCAAGUCUCGCUUAAUAAUACCAUCAUCACCA ....((((((((((((((........))))))))))))(((((((((.(((.((...((....))..............(((....)))........)).))))))))))))..)).... ( -24.90) >DroSim_CAF1 2783 120 + 1 AAAAGAAAUUUUGUUUUAGAAUUAGGUAAAAUAAAAUUGUGGUAUUACUUACGCUAAGGGCAACCACACUCAUCAACAACCAUUUUUGGCAAGUCUCGCUUAAUAAUACCAUCAUCACCA ....((((((((((((((........))))))))))))(((((((((.(((.((...((....))..............(((....)))........)).))))))))))))..)).... ( -24.90) >DroEre_CAF1 12240 120 + 1 UAAAGAAAUGUUGUAAAAAAAUUAUAUAAAGUUAGAUUGUGGUAUUACUUACGCUAAGGGCAACCACAUUCAUCAACAACCAUUUUUGGCAAGUCUCGUUUAAUAAUACCAUCAUCACCA ..................................(((.(((((((((.(((.((...((....))..............(((....)))........)).)))))))))))).))).... ( -20.80) >DroYak_CAF1 4033 120 + 1 AAAAGAAAUUUUAUAAAAGUAUUAUUUAAAGUUAGUUAGUGGUAUUACUUACGCUAAGGGCAACCACACUCAUCAACAACCAUUUUUGGCAAGUCUCGCUUAAUAAUACCAUCAUCACCA ....(((((((((.............))))))).....(((((((((.(((.((...((....))..............(((....)))........)).))))))))))))..)).... ( -19.62) >consensus AAAAGAAAUUUUGUUAUAGAAUUAGGUAAAAUAAGAUUGUGGUAUUACUUACGCUAAGGGCAACCACACUCAUCAACAACCAUUUUUGGCAAGUCUCGCUUAAUAAUACCAUCAUCACCA ..................................(((.(((((((((.(((.((...((....))..............(((....)))........)).)))))))))))).))).... (-17.42 = -17.98 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:08 2006