Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 1,093,449 – 1,093,559 |
Length | 110 |
Max. P | 0.786109 |
Location | 1,093,449 – 1,093,559 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 77.88 |
Mean single sequence MFE | -21.17 |
Consensus MFE | -13.97 |
Energy contribution | -15.56 |
Covariance contribution | 1.59 |
Combinations/Pair | 1.41 |
Mean z-score | -1.50 |
Structure conservation index | 0.66 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.786109 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1093449 110 - 1281640 AAUUUACCCUGCAGUUUGGAAAAAUCUGGUCCAGCUUCUUUAGCCAAUUUAACAAUUUUAUCCGUAACUUGACGAGAUUUUUUUAAGCGUUCCUUGAUAUUUUCAGAAAU .............((((((((((((((.(((..(((.....))).......((..........)).....))).)))))))))))))).....((((.....)))).... ( -20.10) >DroPse_CAF1 46917 110 - 1 AUUUUAGUCUUCAGUUUCGAGAAAUCUGGAUGCGCUUCCUUCGCAAUUUUUACAAUCUGUUCCGAUUCUUGUCUUAAUUUUUCGAAGCGCUGCUUUAGCUUUUCCGUAAU .............((((((((((((..(((((((.......))).........((((......))))...))))..))))))))))))((((...))))........... ( -22.30) >DroSec_CAF1 7903 110 - 1 AAAUUCCCCUUCAGUUUGGAAAAAUCUGGUCCAGCUUCUUUAGCCAAUUUAACAAUUUUAUCCGUAACUUGGCGAGAUUUUUCUAAGCGUUUCUUGAUAUUUUCGGAAAA ...((((......((((((((((((((.(.((((((.....))).......((..........))....)))).)))))))))))))).......((.....)))))).. ( -25.20) >DroEre_CAF1 8290 110 - 1 AAUUUUCCCUUAAUUUUGGACAAAUCUGGAGAAGCUUCUUUUGCCAAUUUAACAAUAUUAUCCGGUACUUGACGAGAUUUUUCCAAGCGUUCCUUAAUAUUUUUAGAAAU ...............((((.((((...((((...)))).))))))))(((((.(((((((...((..((((..(((....)))))))....)).))))))).)))))... ( -15.20) >DroYak_CAF1 40 110 - 1 AAUUUUCCCUUCAUUUUGGAAAAAUCUGGAGAAGCUUCUUUGGCCAAUUUUACAAUUUUAUCCGAACCUUGAAGAGAUUUUUCCAAGCGUUCCUUAAUGAUUUUAGAAAU ...((((...(((((..((((.....((((((((.(((((..(.........................)..))))).))))))))....))))..))))).....)))). ( -21.91) >DroPer_CAF1 43084 110 - 1 AUUUUAGUCUUCAGUUUCGAGAAAUCUGGAUGCGCUUCCUUCGCAAUUUUUACAAUCUGUUCCGAUUCUUGUCUUAAUUUUUCGAAGCGCUGCUUUAGCUUUUCCGUAAU .............((((((((((((..(((((((.......))).........((((......))))...))))..))))))))))))((((...))))........... ( -22.30) >consensus AAUUUACCCUUCAGUUUGGAAAAAUCUGGACAAGCUUCUUUAGCCAAUUUAACAAUUUUAUCCGAAACUUGACGAGAUUUUUCCAAGCGUUCCUUAAUAUUUUCAGAAAU .............((((((((((((((.((((((..((.........................))..)))))).))))))))))))))...................... (-13.97 = -15.56 + 1.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:06 2006