Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 1,088,358 – 1,088,451 |
Length | 93 |
Max. P | 0.518975 |
Location | 1,088,358 – 1,088,451 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 94.98 |
Mean single sequence MFE | -21.33 |
Consensus MFE | -18.54 |
Energy contribution | -18.77 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.07 |
Mean z-score | -1.84 |
Structure conservation index | 0.87 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.518975 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1088358 93 - 1281640 UAUCAAGGAAUAAGUGGUGACUGGAAAAUUGCUUUUCAAACGAAGAUAAUUCCUGUUUUGCUUUUUCGAAAGAAGUUGAGAAGUAGUUUAUAA ..((.((..((.....))..)).))((((((((((((((...((((((.....))))))....((((....)))))))))))))))))).... ( -19.80) >DroSim_CAF1 18960 93 - 1 UAUCAAGGAAUAAGUGGUGACUGGAAAAUUGCUUUUCAAACGAAGAUAGUUCCUGUUUUGCUUUUUCGAAAGAAGUUGAGAAGUAGUUUAUAA ..((.((..((.....))..)).))((((((((((((((...(((((((...)))))))....((((....)))))))))))))))))).... ( -21.30) >DroYak_CAF1 25870 93 - 1 UAUCAAGGAAUAGAUGGUGACUGGAAAGUUGCUUCUCAAACGAAGAUAGUUCCCGUUUUGCUUUUUCGAAAGAAGUUGAGAAGUAGUUGAUAA ((((((............((((....))))((((((((((((..((....)).))).......((((....)))))))))))))..)))))). ( -22.90) >consensus UAUCAAGGAAUAAGUGGUGACUGGAAAAUUGCUUUUCAAACGAAGAUAGUUCCUGUUUUGCUUUUUCGAAAGAAGUUGAGAAGUAGUUUAUAA ..((.((..((.....))..)).))((((((((((((((...((((((.....))))))....((((....)))))))))))))))))).... (-18.54 = -18.77 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:05 2006