Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 1,086,643 – 1,086,763 |
Length | 120 |
Max. P | 0.808734 |
Location | 1,086,643 – 1,086,763 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.78 |
Mean single sequence MFE | -37.89 |
Consensus MFE | -34.86 |
Energy contribution | -35.19 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.06 |
Mean z-score | -1.96 |
Structure conservation index | 0.92 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.808734 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1086643 120 + 1281640 GAACUUAAACAGCUGUUCGCAUCGCGAGCAGAUAAACAGUGGCUUGGUGUCCGGCAAAGUUAACGAAAAAGCUGGCAUUACGUCUAGCCUGCUGUUGCAGGCAAACUAUAUAAAGGAGUC ..((((......((((((((...))))))))......((((((.(((((.(((((...............)))))))))).)))..((((((....))))))..)))........)))). ( -39.36) >DroSim_CAF1 17245 120 + 1 GAACUUAAACAGCUGUUCGCAUCGCGAGCAGAUAAACAGUGGCUUGGUAUCCGGCAGAGUCAACGAACGAGCUGGCAUUACGUCUAGUCUGCUGUUGCAGGCAAACUAUAUUAAGGAGUC ...(((((....((((((((...))))))))......((((((.((((..(((((...((......))..))))).)))).)))..((((((....))))))..)))...)))))..... ( -34.70) >DroYak_CAF1 24152 120 + 1 GAACUUAAACAGCUGUUCGCAUCGCGAGCAGAUAAACAGUGGUUUGGUGUCCGGAAAAGUCAACGAGAAGGCUGGCAUUACAUCUAGCCUGCUGCUGCAGGCAAACUAUAUUAAGGAGUC ...(((((....((((((((...)))))))).......((((((((((((...(...((((........))))..)...)))))..((((((....))))))))))))).)))))..... ( -39.60) >consensus GAACUUAAACAGCUGUUCGCAUCGCGAGCAGAUAAACAGUGGCUUGGUGUCCGGCAAAGUCAACGAAAAAGCUGGCAUUACGUCUAGCCUGCUGUUGCAGGCAAACUAUAUUAAGGAGUC ...(((((....((((((((...))))))))......((((((.(((((.(((((...............)))))))))).)))..((((((....))))))..)))...)))))..... (-34.86 = -35.19 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:04 2006