Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 1,085,029 – 1,085,149 |
Length | 120 |
Max. P | 0.712395 |
Location | 1,085,029 – 1,085,149 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.50 |
Mean single sequence MFE | -28.12 |
Consensus MFE | -23.58 |
Energy contribution | -23.42 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.17 |
Mean z-score | -1.43 |
Structure conservation index | 0.84 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.712395 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1085029 120 + 1281640 CUGUACUUGUUUCGCUGUAUUUGUAUUUAUUUACAAGACAUACACUUAAAUACUAUGUGGCACAAUUGUAGAUGUGUGAGUUCUUGAUUUAUUUGAGGUAUUUAAAGUGAGUGUUUUCAC .......((...((((((.((((((......))))))))...(((((((((((....(.(((((........))))).)...((..(.....)..)))))))).)))))))))....)). ( -23.00) >DroSec_CAF1 17112 120 + 1 AUUUACUUGUGCCGCUGUAUUUGUAUAUAUUUACAAGACAUACACUUAAAUACUAUGUGGCACAAUUCUAGAUGUGUGGGUUCUUGAUUUGUUCGAGGUAUUUAAAGUGAGUGUUUUCAC (((((((((((((((.(((((((((......)))(((.......)))))))))...))))))).............(((((((((((.....)))))).)))))))))))))........ ( -28.30) >DroSim_CAF1 15575 118 + 1 CUUUACUUGUGCCGCUGUAUGUG--UAUAUUUACAAGACAUACACUUAAAUACUAUGUGGCACAAUUGGAGAUGUGUGGGUUCUUGAUUUGUUCGAGGUAUUUAAAGUGAGUGUUUUCAC (((((.(((((((((.(((((((--(((.((.....)).))))))....))))...))))))))).))))).....(((((((((((.....)))))).)))))..(((((....))))) ( -33.50) >DroEre_CAF1 24507 120 + 1 CUUUACUCGUGCGGCUGUAUUUGUAUUUAUUUACAAGACAUACACUUAAAUACUACGUGGCACAAGUACAGAUGUGUGGGUUCUUGAUUUAUUCGAGGUAUUUAAAGUGAGUGUUUUCAC ....(((((..((.((((((((((.(((......))).....(((.((.....)).)))..)))))))))).))..)))))((((((.....))))))........(((((....))))) ( -27.30) >DroYak_CAF1 21623 120 + 1 CUUUACUUAUGCCGCUGUAUAUGUAUUAAUUUACAAGACAUACGCUUAAAUACUGCGUGACACAAGUGCUGAUGUGUGGGUUCUUGAUUUAUACGAGGUAUUUAAAGUGAGUGUUUUCAC ...(((.(((((....))))).))).........(((((((.((((((((((((.((((...((((.(((.(....).))).)))).....)))).))))))).))))).)))))))... ( -28.50) >consensus CUUUACUUGUGCCGCUGUAUUUGUAUUUAUUUACAAGACAUACACUUAAAUACUAUGUGGCACAAUUGCAGAUGUGUGGGUUCUUGAUUUAUUCGAGGUAUUUAAAGUGAGUGUUUUCAC ...(((..((((....))))..))).........(((((((.(((((((((((....(.(((((........))))).)...(((((.....))))))))))).))))).)))))))... (-23.58 = -23.42 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:02 2006