Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 1,083,586 – 1,083,692 |
Length | 106 |
Max. P | 0.983863 |
Location | 1,083,586 – 1,083,692 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 84.47 |
Mean single sequence MFE | -26.04 |
Consensus MFE | -19.21 |
Energy contribution | -19.77 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -3.76 |
Structure conservation index | 0.74 |
SVM decision value | 1.96 |
SVM RNA-class probability | 0.983863 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1083586 106 + 1281640 CUAUGUACCUAUGCUUGCAUUUGUAAGCAUACUUUCAUCUAUAUGAAAAAAGGGCAUAAAAAUGUAUAACAAAUUCCAUUACAGAUGUGUGCAAACAUGGAUUGCA ((((((.(((((((((((....))))))))..((((((....))))))..)))(((((....((((.............))))....)))))..))))))...... ( -28.52) >DroSec_CAF1 16207 97 + 1 -UAUAAACUUAUGUUUGCAUUUAAAAGCUUACUUUCAUCUAUAUGAAAAAAGGGCAUAAAAGUGUUUAACACAG--------UUAUGUGUGCAAACAUGAAUUGCU -.......((((((((((((.......(((..((((((....))))))..)))((((((..(((.....)))..--------))))))))))))))))))...... ( -25.80) >DroSim_CAF1 14684 97 + 1 -UAUAAACUUAUGUUUGCAUUUGAAAGCUUACUUUCAUCUAUAUGAAAAAAGGGCAUAAAAGUGUUUAACACAG--------AUAUGUGUGCAAACAUGAAUUGCU -.......((((((((((((.((((((....))))))................(((((...(((.....)))..--------.)))))))))))))))))...... ( -23.80) >consensus _UAUAAACUUAUGUUUGCAUUUGAAAGCUUACUUUCAUCUAUAUGAAAAAAGGGCAUAAAAGUGUUUAACACAG________AUAUGUGUGCAAACAUGAAUUGCU ........((((((((((((......((((..((((((....))))))...))))......(((.....)))................))))))))))))...... (-19.21 = -19.77 + 0.56)
Location | 1,083,586 – 1,083,692 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 84.47 |
Mean single sequence MFE | -22.63 |
Consensus MFE | -17.13 |
Energy contribution | -16.80 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.08 |
Mean z-score | -3.03 |
Structure conservation index | 0.76 |
SVM decision value | 1.59 |
SVM RNA-class probability | 0.966339 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1083586 106 - 1281640 UGCAAUCCAUGUUUGCACACAUCUGUAAUGGAAUUUGUUAUACAUUUUUAUGCCCUUUUUUCAUAUAGAUGAAAGUAUGCUUACAAAUGCAAGCAUAGGUACAUAG ......(((((((((((..((((((((.(((((...(.((((......)))).)....)))))))))))))...(((....)))...))))))))).))....... ( -24.20) >DroSec_CAF1 16207 97 - 1 AGCAAUUCAUGUUUGCACACAUAA--------CUGUGUUAAACACUUUUAUGCCCUUUUUUCAUAUAGAUGAAAGUAAGCUUUUAAAUGCAAACAUAAGUUUAUA- ...((((.(((((((((..(((((--------..(((.....)))..)))))..((((((((((....))))))).)))........))))))))).))))....- ( -21.80) >DroSim_CAF1 14684 97 - 1 AGCAAUUCAUGUUUGCACACAUAU--------CUGUGUUAAACACUUUUAUGCCCUUUUUUCAUAUAGAUGAAAGUAAGCUUUCAAAUGCAAACAUAAGUUUAUA- ...((((.(((((((((..((((.--------..(((.....)))...)))).................((((((....))))))..))))))))).))))....- ( -21.90) >consensus AGCAAUUCAUGUUUGCACACAUAU________CUGUGUUAAACACUUUUAUGCCCUUUUUUCAUAUAGAUGAAAGUAAGCUUUCAAAUGCAAACAUAAGUUUAUA_ ....(((.(((((((((.................(((.....)))......((....(((((((....)))))))...)).......))))))))).)))...... (-17.13 = -16.80 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:01 2006