Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 185,130 – 185,250 |
Length | 120 |
Max. P | 0.724160 |
Location | 185,130 – 185,250 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.42 |
Mean single sequence MFE | -28.45 |
Consensus MFE | -26.56 |
Energy contribution | -26.88 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.12 |
Mean z-score | -1.43 |
Structure conservation index | 0.93 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.724160 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 185130 120 - 1281640 UUACGAGCUGAAGAAUGAAAACAAUUUUCUCCAUGGCUCUAUCUCGGAAAAAGUAUUAGACGAAGCCAGGUACAAUCUUGCCACUCACCUUAUGUCAAAUGGAGUGGAACUAAUAAUUAC ....((((((((((.((....)).))))).....)))))..............((((((.......((((......))))((((((...............))))))..))))))..... ( -21.76) >DroSim_CAF1 9051 120 - 1 UUACGAGCUGAAUAAUGAAAAUAAUUUUUUAUAUGGCUCUGUCUCGGAAAAAGUAUUAGACGAAGCCAGGUACAAUCUUGCCACUCACGUUAUGUCAAAUGGAGUGGAACUAAUAAUUAC ...((((.((....(((((((....))))))).(((((.(((((.............))))).)))))....))..))))((((((.((((......))))))))))............. ( -26.72) >DroEre_CAF1 14107 120 - 1 GUACGAGCUGGAUAACGAAAAUAAUUUGUUAUAUGGCUCCGUCUCGGCAAAAGUAUUAGACGAAGCCAGGUACAAUCUUGCCACUCACGUUAUGUCAAAUGGAGUGGAACUAAUAAUUGC ((((.......((((((((.....)))))))).(((((.(((((..((....))...))))).))))).)))).......((((((.((((......))))))))))............. ( -35.90) >DroYak_CAF1 11190 120 - 1 CUUUGAGUUAGAUAACGAAAGUAAUUUGUUAUAUGGCUCUGUCUCGGAAAAAGUAUUAGACGAGGCCAGGUACAAUCUUGCCACUCAUGUUAUGUCAAAUGGAGUGGAACUAAUAAUUGC ....((((((.((((((((.....)))))))).)))))).((((((..............))))))((((......))))((((((.((((......))))))))))............. ( -29.44) >consensus UUACGAGCUGAAUAACGAAAAUAAUUUGUUAUAUGGCUCUGUCUCGGAAAAAGUAUUAGACGAAGCCAGGUACAAUCUUGCCACUCACGUUAUGUCAAAUGGAGUGGAACUAAUAAUUAC ....((((((.((((((((.....)))))))).))))))..............((((((.......((((......))))((((((.((((......))))))))))..))))))..... (-26.56 = -26.88 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:28 2006