Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 1,083,340 – 1,083,500 |
Length | 160 |
Max. P | 0.977719 |
Location | 1,083,340 – 1,083,460 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.33 |
Mean single sequence MFE | -30.30 |
Consensus MFE | -27.18 |
Energy contribution | -27.18 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.07 |
Mean z-score | -1.68 |
Structure conservation index | 0.90 |
SVM decision value | 1.80 |
SVM RNA-class probability | 0.977719 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1083340 120 - 1281640 CUGUAAUUAAAAGUUGCUGGAAAGCAAAACGCUGCUCGAUAAGCACGCAGAAAGGCAGCCUGCGUGAUCGGACAGAAAAAAUUACAGUUCGAAAGAAGUUUACUCUUGUAUUGUUCCCGG ((((((((.....(((((....)))))....(((..((((...(((((((.........)))))))))))..)))....))))))))(((....)))...(((....))).......... ( -35.60) >DroSec_CAF1 15987 120 - 1 CUUUAAUUAAAAGUUGCUGGAAAGCAAAACGCUGCUCGAUAAGCGCGCAAAAUGACAGCCUGCGUGAUCGGACAGAAAAAAUUACAGUUCGAAAGAAGUUUACUUUUGUAUUGUUCCAGG ................(((((..((((.((.(((..((((...((((((...........))))))))))..)))..((((.((.(.(((....))).).)).)))))).))))))))). ( -30.00) >DroSim_CAF1 14464 120 - 1 CUUUAAUUAAAAGUUGCUGGAAAGCAAAACGCUGCUCGAUAAGCGCGCAAAAUGACAGCCUGCGUGAUCGGACAGAAAAAAUUACAGUUCGAAAGAAGUUUACUUUUGUAUUGUUCCAGG ................(((((..((((.((.(((..((((...((((((...........))))))))))..)))..((((.((.(.(((....))).).)).)))))).))))))))). ( -30.00) >DroEre_CAF1 22730 120 - 1 CUUUAAUUAAAAGUUGCUGGAAAGCAAAACGCUGCUCGAUAAGCACGCAAAAUGACAGCCUGCGUGAUCGGACAGAAAAAAUUACAGUUCGAAAGAAUGUUACUUCUGUAUUGUUCCACG .............(((((....)))))(((.(((..((((...((((((...........))))))))))..))).......((((((((....)))........)))))..)))..... ( -27.40) >DroYak_CAF1 20312 120 - 1 CUUUAAUUAAAAGUAGCUGGAAAGCAAAACGCUGCUCGAUAAGCACGCAAAAUGACACACUGCGUGAUCGGACAGAAAAAAUUACAGUUCGAAAGAAUGUUACUUCUGUAUUGUUCUAGG ................(((((..((((.((.(((..((((...((((((...........))))))))))..)))...........((((....)))).........)).))))))))). ( -28.50) >consensus CUUUAAUUAAAAGUUGCUGGAAAGCAAAACGCUGCUCGAUAAGCACGCAAAAUGACAGCCUGCGUGAUCGGACAGAAAAAAUUACAGUUCGAAAGAAGUUUACUUUUGUAUUGUUCCAGG ................(((((..((((.((.(((..((((...((((((...........))))))))))..)))............(((....)))..........)).))))))))). (-27.18 = -27.18 + -0.00)
Location | 1,083,380 – 1,083,500 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.50 |
Mean single sequence MFE | -26.34 |
Consensus MFE | -24.24 |
Energy contribution | -24.20 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.21 |
Structure conservation index | 0.92 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.660758 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1083380 120 - 1281640 GUUCCUGAAUUGCAGUUAACGACUGAUAAGAAACUUUAAUCUGUAAUUAAAAGUUGCUGGAAAGCAAAACGCUGCUCGAUAAGCACGCAGAAAGGCAGCCUGCGUGAUCGGACAGAAAAA (((.((.((((((((((((.(.((....))...).)))).))))))))...))(((((....)))))))).(((..((((...(((((((.........)))))))))))..)))..... ( -32.30) >DroSec_CAF1 16027 120 - 1 GUUCAUGAAUUGCAGUUAACGACUGAUAAGAAACUUUAAUCUUUAAUUAAAAGUUGCUGGAAAGCAAAACGCUGCUCGAUAAGCGCGCAAAAUGACAGCCUGCGUGAUCGGACAGAAAAA ((((.......(((((.......((((((((........))))..))))....(((((....)))))...)))))..(((...((((((...........)))))))))))))....... ( -24.60) >DroSim_CAF1 14504 120 - 1 GUUCAUGAAUUGCAGUUAACGACUGAUAAGAAACUUUAAUCUUUAAUUAAAAGUUGCUGGAAAGCAAAACGCUGCUCGAUAAGCGCGCAAAAUGACAGCCUGCGUGAUCGGACAGAAAAA ((((.......(((((.......((((((((........))))..))))....(((((....)))))...)))))..(((...((((((...........)))))))))))))....... ( -24.60) >DroEre_CAF1 22770 120 - 1 GUUCAUGAAUUGCAGUUACCGACUGAUAAGAAACUUUAAUCUUUAAUUAAAAGUUGCUGGAAAGCAAAACGCUGCUCGAUAAGCACGCAAAAUGACAGCCUGCGUGAUCGGACAGAAAAA ((((.......(((((.......((((((((........))))..))))....(((((....)))))...)))))..(((...((((((...........)))))))))))))....... ( -25.00) >DroYak_CAF1 20352 120 - 1 GUUCAUGAAUUGCAGUUAACGACUGAUAAGAAACUUUAAUCUUUAAUUAAAAGUAGCUGGAAAGCAAAACGCUGCUCGAUAAGCACGCAAAAUGACACACUGCGUGAUCGGACAGAAAAA (((..((..((.((((((.........((((........))))..........)))))).))..)).))).(((..((((...((((((...........))))))))))..)))..... ( -25.21) >consensus GUUCAUGAAUUGCAGUUAACGACUGAUAAGAAACUUUAAUCUUUAAUUAAAAGUUGCUGGAAAGCAAAACGCUGCUCGAUAAGCACGCAAAAUGACAGCCUGCGUGAUCGGACAGAAAAA ((((.......(((((..................((((((.....))))))..(((((....)))))...)))))..(((...((((((...........)))))))))))))....... (-24.24 = -24.20 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:59 2006