Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 1,074,135 – 1,074,228 |
Length | 93 |
Max. P | 0.965030 |
Location | 1,074,135 – 1,074,228 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 95.74 |
Mean single sequence MFE | -20.13 |
Consensus MFE | -19.99 |
Energy contribution | -20.10 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -2.25 |
Structure conservation index | 0.99 |
SVM decision value | 1.58 |
SVM RNA-class probability | 0.965030 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1074135 93 - 1281640 UUAGUCUAACUAUGGAGCAUU-UAUGUGGGCAGUUUUAUGGAAUCACGGCCUAAAAUAAAAAGAUAAUAUGAAAUAUAUUACUUUAGAGUUCCA ............((((((..(-(((.(((((.((((....))))....)))))..))))((((.(((((((...)))))))))))...)))))) ( -17.40) >DroSec_CAF1 7296 94 - 1 UUAGUCUAACUAUGGAGCAUUGCAUGUGGGCAGUUUUAUGAAAUCACUGCCUAAAAUAAAAAGAUAAUAUGAAAUAUAUUACUUUACAGUUCCA ............((((((........((((((((...........))))))))......((((.(((((((...)))))))))))...)))))) ( -21.50) >DroSim_CAF1 7016 94 - 1 UUAGUCUAACUAUGGAACAUUGCAUGUGGGCAGUUUUAUGAAAUCACUGCCUAAAAUAAAAAGAUAAUAUGAAAUAUAUUACUUUACAGUUCCA ............((((((........((((((((...........))))))))......((((.(((((((...)))))))))))...)))))) ( -21.50) >consensus UUAGUCUAACUAUGGAGCAUUGCAUGUGGGCAGUUUUAUGAAAUCACUGCCUAAAAUAAAAAGAUAAUAUGAAAUAUAUUACUUUACAGUUCCA ............((((((........((((((((...........))))))))......((((.(((((((...)))))))))))...)))))) (-19.99 = -20.10 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:55 2006