Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 1,074,025 – 1,074,116 |
Length | 91 |
Max. P | 0.722618 |
Location | 1,074,025 – 1,074,116 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 94.14 |
Mean single sequence MFE | -27.33 |
Consensus MFE | -23.83 |
Energy contribution | -25.17 |
Covariance contribution | 1.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.12 |
Structure conservation index | 0.87 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.722618 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1074025 91 - 1281640 AUGCGGAGGUAGUUCAGUAUAGUGAUAUGUGCACAAAUUAAUGCGCAGACGCUCCUGAAACGAACCGUCGUUGGCAAAAGUUUUCGAUUUA .......(((..(((((...((((...((((((........))))))..)))).)))))....)))((((..(((....)))..))))... ( -23.00) >DroSec_CAF1 7185 91 - 1 AUGCGGAGGUAGUUCAGGAUAGUGAUACGUGCACAAACUAGUGCGCAGACUCUCCUGAAACUUACCGUCGUUGGCAAAAGUUUUCGAUUUA .......((((.(((((((.(((.....((((((......))))))..))).)))))))...))))((((..(((....)))..))))... ( -29.50) >DroSim_CAF1 6905 91 - 1 AUGCGAAGGUAGUUCAGGAUAGUGAUACGUGCACAAACUAGUGCGCAGACUCUCCUGAAACUUACCGUCGUUGGCAAAAGUUUUCGAUUUA .......((((.(((((((.(((.....((((((......))))))..))).)))))))...))))((((..(((....)))..))))... ( -29.50) >consensus AUGCGGAGGUAGUUCAGGAUAGUGAUACGUGCACAAACUAGUGCGCAGACUCUCCUGAAACUUACCGUCGUUGGCAAAAGUUUUCGAUUUA .......((((.(((((((.(((.....((((((......))))))..))).)))))))...))))((((..(((....)))..))))... (-23.83 = -25.17 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:54 2006