Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 1,071,386 – 1,071,530 |
Length | 144 |
Max. P | 0.998192 |
Location | 1,071,386 – 1,071,505 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 71.59 |
Mean single sequence MFE | -26.41 |
Consensus MFE | -12.93 |
Energy contribution | -13.80 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.17 |
Mean z-score | -2.98 |
Structure conservation index | 0.49 |
SVM decision value | 3.03 |
SVM RNA-class probability | 0.998192 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1071386 119 + 1281640 UAAUUCAAGUGAGUUCUCUUAAAGCACGUUGCUUA-AACUAGAAAACUCGACCUCCAUUUUGAAGAUUUUGGUGGUUGAAGUUUUUUCAUGUGAUCAUGAAAUCAUACGAAAAAACACCA ...(((....(((((.(((..((((.....)))).-....))).)))))((((.(((............))).)))))))((((((((.((((((......)))))).)))))))).... ( -31.40) >DroSec_CAF1 4472 107 + 1 UAAUUCAAGUGAUUUCUCUUAAAGAAAC---ACUA-GACUAGAAAUCUCGACCUCCAUUUUGAAGAUUUUGGUGGUUGAGGUUUGUUCAUGUGAC----AAAACAU-----AAAACACAA ....((.((((.(((((.....))))))---))).-))....(((((((((((.(((............))).)))))))))))(((.((((...----...))))-----..))).... ( -27.70) >DroSim_CAF1 3867 107 + 1 UAAUUCAAGUGAUUUCUCUUAAAGAAAC---ACUA-GACUAGAAAACUCGACCACCAUUUUGAAGAUUUUGGUGGUUGAGGUUUGUUCAUGUGAC----AAAACAU-----AAAACACAA ....((.((((.(((((.....))))))---))).-))........(((((((((((............)))))))))))((((....((((...----...))))-----.)))).... ( -29.30) >DroEre_CAF1 6000 97 + 1 UAAUUC-------------------ACGCUGCUUACAAAUGUAAAACUCCACCUUCAUUUCAAAGAUUUCGAUGGUGGCGUUCUGUCCAUGUGGC----AAUACAUACGAAAAAACACAA ......-------------------..((..(((((....))))(((.(((((.((..............)).))))).)))........)..))----..................... ( -17.24) >consensus UAAUUCAAGUGAUUUCUCUUAAAGAAAC___ACUA_AACUAGAAAACUCGACCUCCAUUUUGAAGAUUUUGGUGGUUGAGGUUUGUUCAUGUGAC____AAAACAU_____AAAACACAA ..........................................(((((((((((.(((............))).))))))))))).....((((......................)))). (-12.93 = -13.80 + 0.87)
Location | 1,071,425 – 1,071,530 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 75.61 |
Mean single sequence MFE | -23.53 |
Consensus MFE | -13.09 |
Energy contribution | -13.78 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.17 |
Mean z-score | -2.06 |
Structure conservation index | 0.56 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.843408 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1071425 105 + 1281640 AGAAAACUCGACCUCCAUUUUGAAGAUUUUGGUGGUUGAAGUUUUUUCAUGUGAUCAUGAAAUCAUACGAAAAAACACCAUACUU-----------CGCAAGAAACA--ACAUGUGCG .......((((((.(((............))).)))))).((((((((.((((((......)))))).)))))))).......((-----------(....)))...--......... ( -27.10) >DroSec_CAF1 4508 96 + 1 AGAAAUCUCGACCUCCAUUUUGAAGAUUUUGGUGGUUGAGGUUUGUUCAUGUGAC----AAAACAU-----AAAACACAAUACUU-----------CGGAAGAAACA--ACAUGCGCG ..(((((((((((.(((............))).)))))))))))((.((((((..----....)..-----............((-----------(....)))...--))))).)). ( -25.30) >DroSim_CAF1 3903 96 + 1 AGAAAACUCGACCACCAUUUUGAAGAUUUUGGUGGUUGAGGUUUGUUCAUGUGAC----AAAACAU-----AAAACACAAUACUU-----------CGCAAGAAACA--ACAUGCGCG ......(((((((((((............)))))))))))((.((((.((((...----...))))-----............((-----------(....)))..)--))).))... ( -26.80) >DroEre_CAF1 6021 113 + 1 GUAAAACUCCACCUUCAUUUCAAAGAUUUCGAUGGUGGCGUUCUGUCCAUGUGGC----AAUACAUACGAAAAAACACAAUACUUCUAAUUAUGAUUACAAGAAACAUA-AAUGUGCA ....(((.(((((.((..............)).))))).)))..(..((((((..----................)))....(((.((((....)))).))).......-.)))..). ( -14.91) >consensus AGAAAACUCGACCUCCAUUUUGAAGAUUUUGGUGGUUGAGGUUUGUUCAUGUGAC____AAAACAU_____AAAACACAAUACUU___________CGCAAGAAACA__ACAUGCGCG ..(((((((((((.(((............))).)))))))))))((.((((((......................)))..................(....).........))).)). (-13.09 = -13.78 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:52 2006