Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 1,064,946 – 1,065,058 |
Length | 112 |
Max. P | 0.935338 |
Location | 1,064,946 – 1,065,058 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.37 |
Mean single sequence MFE | -19.48 |
Consensus MFE | -5.30 |
Energy contribution | -5.34 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.27 |
Mean z-score | -2.36 |
Structure conservation index | 0.27 |
SVM decision value | 1.24 |
SVM RNA-class probability | 0.935338 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1064946 112 - 1281640 C-AUAAAUUUCCUCAAGCUUACGAAAACCAGGUAGUUUCCCUA-AAAC--UAGUGGAAAUUACCAGUUUUAACACAUUAAUUGUA-A---ACCUCAUACUUAAAUGUAUCGUUAAUAUAA .-..................((((......(((((((((((((-....--))).)))))))))).........(((((....(((-.---......)))...))))).))))........ ( -20.80) >DroSec_CAF1 12563 114 - 1 CCUUAAAUUUCCUCAAUAUUACGAAAACCACGUAGUUUCCCUAGAAAC--UAGAGGAAAUAACCAGUUUUAAUACAUUAAUUGUA-A---UCCUAAUACUUAAAUGUAUUGUUAAAAUAA ......((((((((.....((((.......))))(((((....)))))--..)))))))).....(((((((((((.....))))-.---...((((((......))))))))))))).. ( -23.20) >DroSim_CAF1 6908 114 - 1 CCUUAAAUUUCCUCAAGAUUACGAAAACCACGUAGUUUCCCUAGAAAC--UAGAGGAAAUAACCAGUUUUAAUACAUUAAUUGUA-A---UCCUAAUACUUAAAUGUAUUGUUAAAAUAA ......((((((((.....((((.......))))(((((....)))))--..)))))))).....(((((((((((.....))))-.---...((((((......))))))))))))).. ( -23.20) >DroEre_CAF1 13359 119 - 1 CCUUAAAUUUGCUCAAGAUUCCGAGAAGCCUAUAGUUUCUCUAAAAACUUUAGUAAAAAUGGCCAGUUUUUAUAAAUUGAUUCUAUCAUUACCUAAUAUUUAAACGUAAUGUUAAAA-AU .......((((((.(((.....(((((((.....)))))))......))).))))))......((((((....)))))).......((((((.............))))))......-.. ( -17.42) >DroYak_CAF1 11496 118 - 1 CCUUAAAUUAGCUUACUAUUACUAGAAGCCGAUAGUUUCUCUAAAAA-UUUGGUAAAAAUUUCCAGUUUAAAUUAAUUGAUUGUA-CAUUACCCAACACAUAAACGUAUUGUUAAAAUAA .......(((((.(((.......((((((.....)))))).......-...(((((.......(((((......)))))......-..)))))............)))..)))))..... ( -12.76) >consensus CCUUAAAUUUCCUCAAGAUUACGAAAACCACGUAGUUUCCCUAAAAAC__UAGUGGAAAUAACCAGUUUUAAUACAUUAAUUGUA_A___ACCUAAUACUUAAAUGUAUUGUUAAAAUAA ..................................(((((((((.......))).)))))).................................((((((......))))))......... ( -5.30 = -5.34 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:46 2006