Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 1,039,009 – 1,039,112 |
Length | 103 |
Max. P | 0.734438 |
Location | 1,039,009 – 1,039,112 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 79.45 |
Mean single sequence MFE | -23.50 |
Consensus MFE | -15.65 |
Energy contribution | -16.02 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.33 |
Mean z-score | -1.53 |
Structure conservation index | 0.67 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.734438 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1039009 103 - 1281640 UUCAGUAUACUUCUAGAUCGCCCAAUUUGACAGCAACUUUCGCUGUAAUAUGGGGCGGGUCGAAGCCACUUGACAAUCCUCAUAAUAUACAUGGUGAGUUGU--A ...(((...((((....((((((......(((((.......)))))......))))))...))))..)))..((((..(((((..........)))))))))--. ( -27.00) >DroVir_CAF1 6286 100 - 1 UUCAGUACACAUCACGAUCACCGAACCUAACCGCAACUUUUGCAGUUAUAUGGGGCGGAUCGAAGCCUCUCGACAAUCCUCAUAAUAUUCACGGUAAGUC----- ...................((((....((((.(((.....))).))))(((((((..(.((((......)))))...))))))).......)))).....----- ( -21.30) >DroGri_CAF1 4033 100 - 1 UUCAAUACACAUCGCGAUCCCCGAAUUUAACUGCAACUUUUGCGGUCAUUUGGGGCGGCUCCAAACCUCUUGAUAACCCGCAUAAUAUUCACGGUAAGUC----- ..........((((.((..(((((((...((((((.....)))))).)))))))((((...(((.....))).....)))).......)).)))).....----- ( -24.40) >DroYak_CAF1 5081 103 - 1 UUCAGUACACUUCUAGAUCGCCAAAUUUGACAGCAACUUUUGCUGUUAUAUGGGGUGGAUCCAAGCCACUUGACAAUCCUCAUAACAUACAUGGUAAGUUGU--A .....(((((((((((((((((..((.((((((((.....)))))))).))..))).))))((((...))))...................))).))).)))--) ( -24.00) >DroMoj_CAF1 6639 105 - 1 UCCAAUACACUUCACGUUCACCGAAUUUGACAGCCACUUUUGCUGUCAUCUGGGGUGGUUCGAAACCCCUUGACAAUCCUCAUAAUAUUCACGGUAAGUCAGAAA ...................((((....(((((((.......)))))))((.(((((........)))))..))..................)))).......... ( -24.30) >DroAna_CAF1 4926 103 - 1 UUCAAUAUACUUCUAGAUCGCCAAAUUUAACCGCUACUUUUGCUGUCAUAUGGGGUGGUUCUAAACCUUUAGACAAUCCCCAUAAUAUUCAUGGUAAGCCAA--A ...(((((.......(((.((.(((..((.....))..))))).))).(((((((..((.((((....))))))...))))))))))))..(((....))).--. ( -20.00) >consensus UUCAAUACACUUCUAGAUCGCCGAAUUUAACAGCAACUUUUGCUGUCAUAUGGGGCGGAUCGAAACCUCUUGACAAUCCUCAUAAUAUUCACGGUAAGUC____A ...................((((......(((((.......)))))..(((((((..(.((((......)))))...))))))).......)))).......... (-15.65 = -16.02 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:42 2006