Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 1,016,496 – 1,016,648 |
Length | 152 |
Max. P | 0.902857 |
Location | 1,016,496 – 1,016,611 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 93.10 |
Mean single sequence MFE | -27.67 |
Consensus MFE | -25.46 |
Energy contribution | -25.13 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.07 |
Mean z-score | -2.24 |
Structure conservation index | 0.92 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.902857 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1016496 115 + 1281640 AAGAAGUAGGAAAUACUUUUGGCCUUCAGUAAUUUAAAACG-CUCUAAGUCAUCAUACUCAGUAUAUGUGUACUAUUUAUGUACAUAAUACUGUUCGAAGGCUCGUACGCACAUCC .(((((((.....)))))))((((((((((((((((.....-...))))).....))))((((((.(((((((.......)))))))))))))...)))))))............. ( -28.30) >DroSec_CAF1 5035 116 + 1 AAGAAGUAGGAAAUACUUUUGGUCUUCAGUAAUUUAAAAUGGCUUAGAGUCAUCAUACUCAGUAUAUGUGUACUAUUUAUGUACAUAAUGCCGUUCGAAGACUUGUAAGCACAUCC .(((((((.....)))))))((((((((....)....((((((...((((......))))......(((((((.......)))))))..)))))).)))))))............. ( -27.60) >DroSim_CAF1 4954 116 + 1 AAGAAGUAGGAAAUACUUUUGGUCUUCAGUAACUUAAAAUGGCUUAGAGUCAUCAUACUCAGUAUAUGUGUACUAUUUAUGUACAUAAUGCCGUUCGAAGACUUGUAAGCACAUCC .(((((((.....)))))))(((((((..........((((((...((((......))))......(((((((.......)))))))..)))))).)))))))............. ( -27.10) >consensus AAGAAGUAGGAAAUACUUUUGGUCUUCAGUAAUUUAAAAUGGCUUAGAGUCAUCAUACUCAGUAUAUGUGUACUAUUUAUGUACAUAAUGCCGUUCGAAGACUUGUAAGCACAUCC .(((((((.....)))))))(((((((...................((((......)))).((((.(((((((.......))))))))))).....)))))))............. (-25.46 = -25.13 + -0.33)
Location | 1,016,496 – 1,016,611 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 93.10 |
Mean single sequence MFE | -27.70 |
Consensus MFE | -24.12 |
Energy contribution | -23.57 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.09 |
Mean z-score | -2.42 |
Structure conservation index | 0.87 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.856986 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1016496 115 - 1281640 GGAUGUGCGUACGAGCCUUCGAACAGUAUUAUGUACAUAAAUAGUACACAUAUACUGAGUAUGAUGACUUAGAG-CGUUUUAAAUUACUGAAGGCCAAAAGUAUUUCCUACUUCUU (((.((((....(.((((((...((((((..(((((.......)))))...))))))((((....(((......-.)))......)))))))))))....)))).)))........ ( -30.10) >DroSec_CAF1 5035 116 - 1 GGAUGUGCUUACAAGUCUUCGAACGGCAUUAUGUACAUAAAUAGUACACAUAUACUGAGUAUGAUGACUCUAAGCCAUUUUAAAUUACUGAAGACCAAAAGUAUUUCCUACUUCUU (((.((((((....(((((((((.(((....(((((.......)))))........((((......))))...))).))).........))))))...)))))).)))........ ( -26.30) >DroSim_CAF1 4954 116 - 1 GGAUGUGCUUACAAGUCUUCGAACGGCAUUAUGUACAUAAAUAGUACACAUAUACUGAGUAUGAUGACUCUAAGCCAUUUUAAGUUACUGAAGACCAAAAGUAUUUCCUACUUCUU (((.((((((....((((((.((((((....(((((.......)))))........((((......))))...))).......)))...))))))...)))))).)))........ ( -26.71) >consensus GGAUGUGCUUACAAGUCUUCGAACGGCAUUAUGUACAUAAAUAGUACACAUAUACUGAGUAUGAUGACUCUAAGCCAUUUUAAAUUACUGAAGACCAAAAGUAUUUCCUACUUCUU (((.((((((....((((((...(((.((..(((((.......)))))...)).)))((((.((((.(.....).))))......))))))))))...)))))).)))........ (-24.12 = -23.57 + -0.55)
Location | 1,016,536 – 1,016,648 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 93.57 |
Mean single sequence MFE | -28.93 |
Consensus MFE | -24.84 |
Energy contribution | -26.40 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.06 |
Mean z-score | -2.10 |
Structure conservation index | 0.86 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.681252 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1016536 112 + 1281640 G-CUCUAAGUCAUCAUACUCAGUAUAUGUGUACUAUUUAUGUACAUAAUACUGUUCGAAGGCUCGUACGCACAUCCUU-UUAGGCCUUGCAUUCGCAAGCGUCAGUAAAUAAGA (-(....((((.((.....((((((.(((((((.......)))))))))))))...)).)))).....))........-...((((((((....))))).)))........... ( -28.30) >DroSec_CAF1 5075 114 + 1 GGCUUAGAGUCAUCAUACUCAGUAUAUGUGUACUAUUUAUGUACAUAAUGCCGUUCGAAGACUUGUAAGCACAUCCUUUUUAGGCCUUGCAUUCGCUAGCGUCAGUAAAUAAGA .((((((((((.((..((...((((.(((((((.......))))))))))).))..)).))))).)))))............(((((.((....)).)).)))........... ( -27.20) >DroSim_CAF1 4994 114 + 1 GGCUUAGAGUCAUCAUACUCAGUAUAUGUGUACUAUUUAUGUACAUAAUGCCGUUCGAAGACUUGUAAGCACAUCCUUUUUAGGCCUUGCAUUCGCAAGCGUCAGUAAAUAAGA .((((((((((.((..((...((((.(((((((.......))))))))))).))..)).))))).)))))............((((((((....))))).)))........... ( -31.30) >consensus GGCUUAGAGUCAUCAUACUCAGUAUAUGUGUACUAUUUAUGUACAUAAUGCCGUUCGAAGACUUGUAAGCACAUCCUUUUUAGGCCUUGCAUUCGCAAGCGUCAGUAAAUAAGA .((((((((((.((..((...((((.(((((((.......))))))))))).))..)).))))).)))))............((((((((....))))).)))........... (-24.84 = -26.40 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:41 2006