Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 1,009,848 – 1,010,008 |
Length | 160 |
Max. P | 0.932382 |
Location | 1,009,848 – 1,009,968 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.00 |
Mean single sequence MFE | -39.10 |
Consensus MFE | -32.36 |
Energy contribution | -32.36 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.12 |
Mean z-score | -1.80 |
Structure conservation index | 0.83 |
SVM decision value | 1.22 |
SVM RNA-class probability | 0.932382 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1009848 120 + 1281640 CACGGAAAACAGCAACGUUGUUAGCUAUCGCUGACUGCAAAUGAAAAGAGACAACUAGAGCAACGCCGCCAAAAUGGCUGGCCGAUGUGUUAGCCGUUGCUCUUGCCAGUGUUUUUUCGC ...........((...((.((((((....)))))).))....(((((((.((....((((((((...(((.....))).(((..(....)..))))))))))).....)).))))))))) ( -39.90) >DroSec_CAF1 49448 120 + 1 CACGGAAAACAGCAACGUUGUUAGCUAUCGCUGACUGUAAAUGAAAAGGGACAACUAGAGCAACGCCGCCAAAAUGGCUGGCCGAUGUGUUGGCCGUUGCUCUUGCCAGUGUUUUUUCGC ..(((((((..((......((((((....)))))).............((.((...((((((((...(((.....))).((((((....)))))))))))))))))).))..))))))). ( -42.10) >DroSim_CAF1 35340 120 + 1 CACGGAAAACAGCAACGUUGUUAGCUAUCGCUGACUGUAAAUGAAAAGGGACAACUAGAGCAACGCCGCCAAAAUGGCUGGCCGAUGUGUUAGCCGUUGCUCUUGCCAGUGUUUUUUCGC ..(((((((..((......((((((....)))))).............((.((...((((((((...(((.....))).(((..(....)..))))))))))))))).))..))))))). ( -37.00) >DroEre_CAF1 53095 120 + 1 CACGGAAAACAGCACAGUUGUUAGCUACCGAUGACUGCAAUGGAAAAGAGACAACCAGAGCAACGCCGUCAAAAUGGCUGGCCGAUGUGUUAGCCGUUGCUCUUGCCAGUGUUUUUUCGC ..(((((((..((((.((((((..((.(((.((....)).)))...)).)))))).(((((((((((((....))))).(((..(....)..))))))))))).....))))))))))). ( -38.30) >DroYak_CAF1 50250 120 + 1 CACGGAAAACAGCAGCGUUGUGAGCUAUCGAUGACUGCAAAGGAAAAGAGACGACAAGAGCAACGACUUCAAAAUGGCUGUCCGAUGUGUUAGCCGUUGCUUUUGCCAGUGUUUUUUCGC ...........(((((((((........))))).))))....(((((((.((..(((((((((((....).....(((((..........)))))))))))))))...)).))))))).. ( -38.20) >consensus CACGGAAAACAGCAACGUUGUUAGCUAUCGCUGACUGCAAAUGAAAAGAGACAACUAGAGCAACGCCGCCAAAAUGGCUGGCCGAUGUGUUAGCCGUUGCUCUUGCCAGUGUUUUUUCGC ...........((...(..((((((....))))))..)....(((((((.((....(((((((((....).....(((((((......))))))))))))))).....)).))))))))) (-32.36 = -32.36 + -0.00)
Location | 1,009,848 – 1,009,968 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.00 |
Mean single sequence MFE | -35.66 |
Consensus MFE | -31.74 |
Energy contribution | -31.94 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.11 |
Mean z-score | -1.24 |
Structure conservation index | 0.89 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.687941 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1009848 120 - 1281640 GCGAAAAAACACUGGCAAGAGCAACGGCUAACACAUCGGCCAGCCAUUUUGGCGGCGUUGCUCUAGUUGUCUCUUUUCAUUUGCAGUCAGCGAUAGCUAACAACGUUGCUGUUUUCCGUG (((..((((((...(((((((((((((((........)))).(((.....)))...)))))))((((((((.((...(.......)..)).))))))))......)))))))))).))). ( -36.90) >DroSec_CAF1 49448 120 - 1 GCGAAAAAACACUGGCAAGAGCAACGGCCAACACAUCGGCCAGCCAUUUUGGCGGCGUUGCUCUAGUUGUCCCUUUUCAUUUACAGUCAGCGAUAGCUAACAACGUUGCUGUUUUCCGUG (((..((((((...(((((((((((((((........)))).(((.....)))...)))))))((((((((.((...(.......)..)).))))))))......)))))))))).))). ( -38.80) >DroSim_CAF1 35340 120 - 1 GCGAAAAAACACUGGCAAGAGCAACGGCUAACACAUCGGCCAGCCAUUUUGGCGGCGUUGCUCUAGUUGUCCCUUUUCAUUUACAGUCAGCGAUAGCUAACAACGUUGCUGUUUUCCGUG (((..((((((...(((((((((((((((........)))).(((.....)))...)))))))((((((((.((...(.......)..)).))))))))......)))))))))).))). ( -36.40) >DroEre_CAF1 53095 120 - 1 GCGAAAAAACACUGGCAAGAGCAACGGCUAACACAUCGGCCAGCCAUUUUGACGGCGUUGCUCUGGUUGUCUCUUUUCCAUUGCAGUCAUCGGUAGCUAACAACUGUGCUGUUUUCCGUG (((..((((((...(((((((((((((((........)))).(((........)))))))))))((((((..((...((..((....))..)).))...)))))).))))))))).))). ( -35.80) >DroYak_CAF1 50250 120 - 1 GCGAAAAAACACUGGCAAAAGCAACGGCUAACACAUCGGACAGCCAUUUUGAAGUCGUUGCUCUUGUCGUCUCUUUUCCUUUGCAGUCAUCGAUAGCUCACAACGCUGCUGUUUUCCGUG (((..((((((..(((((.((((((((((..((.(..((....))..).)).)))))))))).)))))..............(((((....((....)).....))))))))))).))). ( -30.40) >consensus GCGAAAAAACACUGGCAAGAGCAACGGCUAACACAUCGGCCAGCCAUUUUGGCGGCGUUGCUCUAGUUGUCUCUUUUCAUUUGCAGUCAGCGAUAGCUAACAACGUUGCUGUUUUCCGUG (((((((...((.(((.((((((((((((........)))).(((........))))))))))).)))))...)))))....((((.(((((...........))))))))).....)). (-31.74 = -31.94 + 0.20)
Location | 1,009,888 – 1,010,008 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.58 |
Mean single sequence MFE | -38.96 |
Consensus MFE | -35.66 |
Energy contribution | -35.30 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.09 |
Mean z-score | -1.26 |
Structure conservation index | 0.92 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.759895 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1009888 120 + 1281640 AUGAAAAGAGACAACUAGAGCAACGCCGCCAAAAUGGCUGGCCGAUGUGUUAGCCGUUGCUCUUGCCAGUGUUUUUUCGCAUGAGAGCUCAUUAACGUUUCGCUUGGCUAAGUGCGCACC ..(((((((.((....((((((((...(((.....))).(((..(....)..))))))))))).....)).)))))))((((...(((.((.............)))))..))))..... ( -38.52) >DroSec_CAF1 49488 120 + 1 AUGAAAAGGGACAACUAGAGCAACGCCGCCAAAAUGGCUGGCCGAUGUGUUGGCCGUUGCUCUUGCCAGUGUUUUUUCGCAUGAGAGCUCAUUAACGUUUCGCUUGGCUAAGUGCGCACC ..(((((((.((....((((((((...(((.....))).((((((....)))))))))))))).....)).)))))))((((...(((.((.............)))))..))))..... ( -42.82) >DroSim_CAF1 35380 120 + 1 AUGAAAAGGGACAACUAGAGCAACGCCGCCAAAAUGGCUGGCCGAUGUGUUAGCCGUUGCUCUUGCCAGUGUUUUUUCGCAUGAGAGCUCAUUAACGUUUCGCUUGGCUAAGUGCGCACC ..(((((((.((....((((((((...(((.....))).(((..(....)..))))))))))).....)).)))))))((((...(((.((.............)))))..))))..... ( -37.72) >DroEre_CAF1 53135 120 + 1 UGGAAAAGAGACAACCAGAGCAACGCCGUCAAAAUGGCUGGCCGAUGUGUUAGCCGUUGCUCUUGCCAGUGUUUUUUCGCAUGAGAGCUCAUUAACGUUUCGCUUGGCUAAGUGCGCACC ..(((((((.((..(.(((((((((((((....))))).(((..(....)..))))))))))).)...)).)))))))((((...(((.((.............)))))..))))..... ( -39.22) >DroYak_CAF1 50290 120 + 1 AGGAAAAGAGACGACAAGAGCAACGACUUCAAAAUGGCUGUCCGAUGUGUUAGCCGUUGCUUUUGCCAGUGUUUUUUCGCAUGAGAGCUCAUUAACGUUUCGCUUGGCUAAGUGCGCACC ..(((((((.((..(((((((((((....).....(((((..........)))))))))))))))...)).)))))))((((...(((.((.............)))))..))))..... ( -36.52) >consensus AUGAAAAGAGACAACUAGAGCAACGCCGCCAAAAUGGCUGGCCGAUGUGUUAGCCGUUGCUCUUGCCAGUGUUUUUUCGCAUGAGAGCUCAUUAACGUUUCGCUUGGCUAAGUGCGCACC ..(((((((.((....(((((((((....).....(((((((......))))))))))))))).....)).)))))))((((...(((.((.............)))))..))))..... (-35.66 = -35.30 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:36 2006