Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 1,005,133 – 1,005,253 |
Length | 120 |
Max. P | 0.873345 |
Location | 1,005,133 – 1,005,253 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.06 |
Mean single sequence MFE | -35.83 |
Consensus MFE | -33.69 |
Energy contribution | -34.00 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.05 |
Mean z-score | -2.21 |
Structure conservation index | 0.94 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.873345 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1005133 120 + 1281640 GCUUCUUUGCUUCUACCAGAAACACAUCCCUAGCUCUACAAAUAUAUUUCGGUCUGCUCCUGGACCUGACCCUUUUUGUAUGUUUGACUUGGCUUUGGGGUGUCGUCUAUGGACGCGUGC ........((.((((..(((...(((((((.((((...(((((((((.(((((((......))))).))........)))))))))....))))..)))))))..))).)))).)).... ( -34.50) >DroSec_CAF1 44560 120 + 1 GCUUCUUUGCUUCUACCAGAAACACAUCCCUAGCUCUACAAAUAUAUUUCGGUCUGCUCCUGGACCUGACCCUUUUUGUAUGUUUGACUUGGCUUUGGGGUGUCGUCUAUGGACGCGUGC ........((.((((..(((...(((((((.((((...(((((((((.(((((((......))))).))........)))))))))....))))..)))))))..))).)))).)).... ( -34.50) >DroEre_CAF1 47646 120 + 1 GCUUCUUUGCUUCCACCAGAAACACAUCCCUAGCUCUACAAAUAUAUUUCGGUCUGCUCCUGGACCUGACCCUUUUUGAAUGUUUGACUUGAGUUUGGGGUGUCGUCUAUGGACGCGUGC ........((.((((..(((...(((((((.(((((..(((((((.....(((((......))))).....(.....).)))))))....))))).)))))))..))).)))).)).... ( -36.40) >DroYak_CAF1 45228 120 + 1 GCUUCUUUGCUUCCACCAGAAACACAUCCCUAGCUCUACAAAUAUAUUUCGGUCUGCUCCUGGACCUGACCCUUUUUGUAUGUUUGACUUGGGUUUGGGGUGUCGUCUAUGGACGCGUGC ........((.((((..(((...(((((((.(((((..(((((((((.(((((((......))))).))........)))))))))....))))).)))))))..))).)))).)).... ( -37.90) >consensus GCUUCUUUGCUUCCACCAGAAACACAUCCCUAGCUCUACAAAUAUAUUUCGGUCUGCUCCUGGACCUGACCCUUUUUGUAUGUUUGACUUGGCUUUGGGGUGUCGUCUAUGGACGCGUGC ........((.((((..(((...(((((((.(((((..(((((((((.(((((((......))))).))........)))))))))....))))).)))))))..))).)))).)).... (-33.69 = -34.00 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:27 2006