Locus 155

Sequence ID 4_DroMel_CAF1
Location 1,003,466 – 1,003,586
Length 120
Max. P 0.531917
window248

overview

Window 8

Location 1,003,466 – 1,003,586
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 88.75
Mean single sequence MFE -28.15
Consensus MFE -25.85
Energy contribution -26.60
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -1.27
Structure conservation index 0.92
SVM decision value -0.00
SVM RNA-class probability 0.531917
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 1003466 120 + 1281640
UACACACUUUGCGGCAUUUUGCGCUUUUAACAAUUUUAUUGUUAUCGAUCGGCGGUCGCCAGGCUGCCAAUUACCAAGUGCUAGAGCAGAGAAAUUUUAAUUGAACCAAUGAAACUUAGA
......((((((........((((((.(((((((...)))))))......(((((((....))))))).......))))))....))))))............................. ( -29.20)
>DroSec_CAF1 42848 120 + 1
UACACACUUUGCGGCAUUUUGCGCUUUUAACAUUUUUAUUGUUAUCGAUCGGCGGUCGCCAGGCUGCCAAUUACCAAGUGCUAGAGCAGAGAAAUUUCAAUUGAACCAAUGAAACUCAGA
......((((((........((((((.(((((.......)))))......(((((((....))))))).......))))))....))))))...(((((.(((...))))))))...... ( -29.80)
>DroEre_CAF1 44208 99 + 1
UACACACUUUGCGGCAUUUUGCGCUUUUAACAAUUUUAUUGUUAUCGAUCGGCGGUCGCCAGGCUGCCAAUUACCAAGUGCUAGAGCAGACAAAUUCCA---------------------
.......(((((.((.(((.((((((.(((((((...)))))))......(((((((....))))))).......)))))).))))).).)))).....--------------------- ( -26.80)
>DroYak_CAF1 42694 120 + 1
UACACACUUUGCGGCAUUUUGCGCUUUUAACAAUUUUAUUGUUAUCGAUCGGCGGUCGCCAGGCUGCCAAUUACCAAGUGCUAGAGCAGACAAAUUCCAAUUGUACCAAUGAAACUCAGA
.......(((((.((.(((.((((((.(((((((...)))))))......(((((((....))))))).......)))))).))))).).)))).......................... ( -26.80)
>consensus
UACACACUUUGCGGCAUUUUGCGCUUUUAACAAUUUUAUUGUUAUCGAUCGGCGGUCGCCAGGCUGCCAAUUACCAAGUGCUAGAGCAGACAAAUUCCAAUUGAACCAAUGAAACUCAGA
......((((((........((((((.((((((.....))))))......(((((((....))))))).......))))))....))))))............................. (-25.85 = -26.60 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:25 2006