Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 1,001,523 – 1,001,643 |
Length | 120 |
Max. P | 0.680073 |
Location | 1,001,523 – 1,001,643 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.47 |
Mean single sequence MFE | -21.89 |
Consensus MFE | -17.16 |
Energy contribution | -16.79 |
Covariance contribution | -0.37 |
Combinations/Pair | 1.12 |
Mean z-score | -2.04 |
Structure conservation index | 0.78 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.680073 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 1001523 120 - 1281640 CGUCCCGCCCUUUAACCAUCGAAUACAAAUACAAAAAUCGUAUACAUUUAUUCAUGCACAAAUCCACACACAAUGCAUAAUUUUAAUUGUUCGCUUCAAGGGUAGCGCUCAACUCUACUC .((.(..(((((.((....((((((...((((.......))))..........(((((...............))))).........)))))).)).)))))..).))............ ( -16.36) >DroSec_CAF1 40907 120 - 1 CGUCCCGCCCUUGAAGCAUCGAAUACAAAUACAAAAAUCGUACAUAUUUAUUCAUGCACAAAUCCACACACAAUGCAUAAUUUUAAUUGUUUGCUUCAAGGGUAGCGCUCAACUCUACUC .((.(..(((((((((((..(((((....(((.......)))......)))))(((((...............))))).............)))))))))))..).))............ ( -27.36) >DroEre_CAF1 41809 120 - 1 CGUCCCGCCCUUUAACCAGCGAAUACAUACACGAAGAUCGUGCACAUUUAUUCAUGCACAAAUCCACACACAAUGCAUAAUUUUAAUUGUUUGCUUCAAGGGUAGCGCUCAACUCUCCUC .((.(..(((((.....((((((((....((((.....))))...........(((((...............))))).........))))))))..)))))..).))............ ( -22.86) >DroYak_CAF1 40816 120 - 1 CGUCCCGCCCUUUAACCGGCGAAUACGAACACAAAGAUCGUGCACAUUUAUUCAUGCACAAAUCCACACACAAUGCAUAAUUUUAAUUGUUUGCUUCAAGGGUAGCGCUCAACUCUCCUC .((.(..(((((.....((((((((.((.(.....).))(((((..........)))))............................))))))))..)))))..).))............ ( -21.00) >consensus CGUCCCGCCCUUUAACCAGCGAAUACAAACACAAAAAUCGUACACAUUUAUUCAUGCACAAAUCCACACACAAUGCAUAAUUUUAAUUGUUUGCUUCAAGGGUAGCGCUCAACUCUACUC .((.(..(((((.....((((((((....(((.......)))...........(((((...............))))).........))))))))..)))))..).))............ (-17.16 = -16.79 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:21 2006