Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 993,819 – 993,939 |
Length | 120 |
Max. P | 0.996063 |
Location | 993,819 – 993,939 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.50 |
Mean single sequence MFE | -24.10 |
Consensus MFE | -23.14 |
Energy contribution | -23.30 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.03 |
Mean z-score | -1.89 |
Structure conservation index | 0.96 |
SVM decision value | 2.65 |
SVM RNA-class probability | 0.996063 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 993819 120 - 1281640 UACUUUAUAACUUUUUUGCUAACCUUAUUAUCUCUAACGAAAUGGUCUCCAGGGACAGGCUCCUUUUCAAUUAUGCUAUUCUCACGCAUUCUAUAAUUGAAUAAGGGAGUUUUCACGUUA ..................................(((((.....((((....))))(((((((((((((((((((..((.(....).))..)))))))))..))))))))))...))))) ( -24.00) >DroSec_CAF1 32883 119 - 1 UACUUUAUAACUU-UUUGCUAACCUUAUUAUCUCUAACGAAAUGGUCUCCAGGGACAGGCUCCUUUUCAAUUAUGCUGUUCUCACGCAUUCUAUAAUUGAAUAAGGGAGUUUUCACGUUA .............-....................(((((.....((((....))))(((((((((((((((((((.(((......)))...)))))))))..))))))))))...))))) ( -25.00) >DroSim_CAF1 27593 119 - 1 UACUUUAUAACUU-UUUGCUAACCUUAUUAUCUCUAACGAAAUGGUCUCCAGGGACAGGCUCCUUUUCAAUUAUGCUGUUCUCACGCAUUCUAUAAUUGAAUAAGGGAGUUUUCACGUUA .............-....................(((((.....((((....))))(((((((((((((((((((.(((......)))...)))))))))..))))))))))...))))) ( -25.00) >DroEre_CAF1 31320 120 - 1 UACUUUAUAACUUUUUUGCUAACCUUAUUAUCUCUAACGAAAUGGUCUCCAGGGACAGGCUCCUUUUCAAUUAUGCUAUUCACACGCAUUCUAUAAUUGAAUAAGGGAGUUUUCACGUUA ..................................(((((.....((((....))))(((((((((((((((((((..((.(....).))..)))))))))..))))))))))...))))) ( -24.10) >DroYak_CAF1 29652 120 - 1 UACUUUAUAACUUUUUUGCUAACCUUAUUAUCUCUAACGAAAUGGUCUCCAGGGACUGGCUCCUUUUCAAUUAUGCUAUUCACACGCAUCCUAUAAUUGAAUAAGGGAGUUUUCACGUAA ...............((((...(((.(((((.((....)).)))))....)))((..((((((((((((((((((..((.(....).))..)))))))))..))))))))).))..)))) ( -22.40) >consensus UACUUUAUAACUUUUUUGCUAACCUUAUUAUCUCUAACGAAAUGGUCUCCAGGGACAGGCUCCUUUUCAAUUAUGCUAUUCUCACGCAUUCUAUAAUUGAAUAAGGGAGUUUUCACGUUA ..................................(((((.....((((....))))(((((((((((((((((((..((.(....).))..)))))))))..))))))))))...))))) (-23.14 = -23.30 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:13 2006