Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 979,030 – 979,205 |
Length | 175 |
Max. P | 0.860890 |
Location | 979,030 – 979,125 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 79.50 |
Mean single sequence MFE | -24.10 |
Consensus MFE | -15.23 |
Energy contribution | -15.23 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.10 |
Mean z-score | -2.11 |
Structure conservation index | 0.63 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.860890 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 979030 95 + 1281640 GCAUGCAUUACCGAAUAAUCGUAAUUUGUUUCCGAAUUCGAUUUG--------------AUUUCGUAAAAUUUUUUGCUGUCGGAGUGUUUUCUGUACAGUAAACAGCU ....((.((((.(((.(((((.((((((....)))))))))))..--------------..))))))).....(((((((((((((....))))).))))))))..)). ( -24.40) >DroSec_CAF1 13566 104 + 1 GCAUACU----CCGGUAAUCGUAAUUUCCUUCCGAAUUCGAUUUGGUCUGAAUCUUUCGAUUUAGCAAAAGU-UUUGCUAUCGGAAUGUUUUCUAAACAGUAAACAGCU ((....(----((((((((((....(((...((((((...))))))...))).....))))).(((((....-.))))))))))).(((((.((....)).))))))). ( -23.30) >DroSim_CAF1 11315 104 + 1 GCAUACU----CCGGUAAUCGUAAUUUCUUUCCGAAUUCGAUUUGGUCUGAAUCUUUCGAUUUCGCAAAAGU-UUUGCUAUCGGAAUGUUUUCUAAACAGUAAACAGCU ((....(----((((((...((((...((((.((((.((((...(((....)))..)))).))))..)))).-.))))))))))).(((((.((....)).))))))). ( -24.60) >consensus GCAUACU____CCGGUAAUCGUAAUUUCUUUCCGAAUUCGAUUUGGUCUGAAUCUUUCGAUUUCGCAAAAGU_UUUGCUAUCGGAAUGUUUUCUAAACAGUAAACAGCU ((.........((((((((((.(((((......)))))))))......................(((((....)))))))))))..(((((.((....)).))))))). (-15.23 = -15.23 + 0.01)
Location | 979,086 – 979,205 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 81.76 |
Mean single sequence MFE | -24.15 |
Consensus MFE | -15.08 |
Energy contribution | -14.87 |
Covariance contribution | -0.21 |
Combinations/Pair | 1.17 |
Mean z-score | -2.22 |
Structure conservation index | 0.62 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.756930 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 979086 119 + 1281640 UUUUUUGCUGUCGGAGUGUUUUCUGUACAGUAAACAGCUGUUUAAGCUGUUUUCCAGCGGACACCUUUUUCACAAUUUUAAUUCCGAUGUUCGCAUUUAAUUUUUUACUGCAUUUUGAC .........((((((((((.....(((..(.((((((((.....)))))))).)..(((((((.(....................).)))))))...........))).)))))))))) ( -27.45) >DroSec_CAF1 13632 102 + 1 GU-UUUGCUAUCGGAAUGUUUUCUAAACAGUAAACAGCU---------GCUUUCCAGCGGCCACCUUUUUCACAGUUUUAGUUCCUAUGUUCGCAAGUAUUUUUUUACUGCA------- ..-.........(((((((((.((....)).)))).(((---------(((....))))))...................))))).......(((.(((......)))))).------- ( -19.70) >DroSim_CAF1 11381 102 + 1 GU-UUUGCUAUCGGAAUGUUUUCUAAACAGUAAACAGCU---------GCUUUUCAGCGGCCACCUUUUUCACAGUUUUAGUUCCGAUGUUCGCAAGUAUUUUUUUACUGCA------- ..-.....(((((((((((((.((....)).)))).(((---------(((....))))))...................)))))))))...(((.(((......)))))).------- ( -25.30) >consensus GU_UUUGCUAUCGGAAUGUUUUCUAAACAGUAAACAGCU_________GCUUUCCAGCGGCCACCUUUUUCACAGUUUUAGUUCCGAUGUUCGCAAGUAUUUUUUUACUGCA_______ ........(((((((((((((.((....)).)))).............(((....)))......................)))))))))...(((.(((......))))))........ (-15.08 = -14.87 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:54 2006