Locus 147

Sequence ID 4_DroMel_CAF1
Location 979,030 – 979,205
Length 175
Max. P 0.860890
window232 window233

overview

Window 2

Location 979,030 – 979,125
Length 95
Sequences 3
Columns 109
Reading direction forward
Mean pairwise identity 79.50
Mean single sequence MFE -24.10
Consensus MFE -15.23
Energy contribution -15.23
Covariance contribution 0.01
Combinations/Pair 1.10
Mean z-score -2.11
Structure conservation index 0.63
SVM decision value 0.83
SVM RNA-class probability 0.860890
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 979030 95 + 1281640
GCAUGCAUUACCGAAUAAUCGUAAUUUGUUUCCGAAUUCGAUUUG--------------AUUUCGUAAAAUUUUUUGCUGUCGGAGUGUUUUCUGUACAGUAAACAGCU
....((.((((.(((.(((((.((((((....)))))))))))..--------------..))))))).....(((((((((((((....))))).))))))))..)). ( -24.40)
>DroSec_CAF1 13566 104 + 1
GCAUACU----CCGGUAAUCGUAAUUUCCUUCCGAAUUCGAUUUGGUCUGAAUCUUUCGAUUUAGCAAAAGU-UUUGCUAUCGGAAUGUUUUCUAAACAGUAAACAGCU
((....(----((((((((((....(((...((((((...))))))...))).....))))).(((((....-.))))))))))).(((((.((....)).))))))). ( -23.30)
>DroSim_CAF1 11315 104 + 1
GCAUACU----CCGGUAAUCGUAAUUUCUUUCCGAAUUCGAUUUGGUCUGAAUCUUUCGAUUUCGCAAAAGU-UUUGCUAUCGGAAUGUUUUCUAAACAGUAAACAGCU
((....(----((((((...((((...((((.((((.((((...(((....)))..)))).))))..)))).-.))))))))))).(((((.((....)).))))))). ( -24.60)
>consensus
GCAUACU____CCGGUAAUCGUAAUUUCUUUCCGAAUUCGAUUUGGUCUGAAUCUUUCGAUUUCGCAAAAGU_UUUGCUAUCGGAAUGUUUUCUAAACAGUAAACAGCU
((.........((((((((((.(((((......)))))))))......................(((((....)))))))))))..(((((.((....)).))))))). (-15.23 = -15.23 +   0.01) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 3

Location 979,086 – 979,205
Length 119
Sequences 3
Columns 119
Reading direction forward
Mean pairwise identity 81.76
Mean single sequence MFE -24.15
Consensus MFE -15.08
Energy contribution -14.87
Covariance contribution -0.21
Combinations/Pair 1.17
Mean z-score -2.22
Structure conservation index 0.62
SVM decision value 0.49
SVM RNA-class probability 0.756930
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 979086 119 + 1281640
UUUUUUGCUGUCGGAGUGUUUUCUGUACAGUAAACAGCUGUUUAAGCUGUUUUCCAGCGGACACCUUUUUCACAAUUUUAAUUCCGAUGUUCGCAUUUAAUUUUUUACUGCAUUUUGAC
.........((((((((((.....(((..(.((((((((.....)))))))).)..(((((((.(....................).)))))))...........))).)))))))))) ( -27.45)
>DroSec_CAF1 13632 102 + 1
GU-UUUGCUAUCGGAAUGUUUUCUAAACAGUAAACAGCU---------GCUUUCCAGCGGCCACCUUUUUCACAGUUUUAGUUCCUAUGUUCGCAAGUAUUUUUUUACUGCA-------
..-.........(((((((((.((....)).)))).(((---------(((....))))))...................))))).......(((.(((......)))))).------- ( -19.70)
>DroSim_CAF1 11381 102 + 1
GU-UUUGCUAUCGGAAUGUUUUCUAAACAGUAAACAGCU---------GCUUUUCAGCGGCCACCUUUUUCACAGUUUUAGUUCCGAUGUUCGCAAGUAUUUUUUUACUGCA-------
..-.....(((((((((((((.((....)).)))).(((---------(((....))))))...................)))))))))...(((.(((......)))))).------- ( -25.30)
>consensus
GU_UUUGCUAUCGGAAUGUUUUCUAAACAGUAAACAGCU_________GCUUUCCAGCGGCCACCUUUUUCACAGUUUUAGUUCCGAUGUUCGCAAGUAUUUUUUUACUGCA_______
........(((((((((((((.((....)).)))).............(((....)))......................)))))))))...(((.(((......))))))........ (-15.08 = -14.87 +  -0.21) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:54 2006