Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 977,448 – 977,538 |
Length | 90 |
Max. P | 0.534325 |
Location | 977,448 – 977,538 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 84.03 |
Mean single sequence MFE | -26.43 |
Consensus MFE | -18.77 |
Energy contribution | -19.72 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.12 |
Mean z-score | -1.88 |
Structure conservation index | 0.71 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.534325 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 977448 90 - 1281640 ACAUCCCGCCAAGAAAGGCGGAUUGGUAGCGGUCGGCUGUUGCCAAGAAGUGAUAAUUGGGAUUACAAAAACGAAAAGACC---GUAGAAGCC .((..(((((......)))))..))...(((((((((....))).....(((((.......)))))...........))))---))....... ( -29.60) >DroSec_CAF1 12032 90 - 1 ACAUCCCGCCAAGAAAGGCGGAUUGGUAGCGGUCGGCUGUUGCCAAGAAGUGAUAAUUGGGAUUACAAAAACCAGAAGACC---GUAGAAGCC .((..(((((......)))))..))...(((((((((....)))............((((...........))))..))))---))....... ( -29.80) >DroSim_CAF1 9763 89 - 1 ACAUCCCGCCAAGAAAGGCGGAUUGGUAGCGGUCGGCUGUUGCCAAGAAGUGAUAAUUGGGAUUACAAAAACCAGAAGACC---GU-GAAGCC .....(((((......)))))...(((.(((((((((....)))............((((...........))))..))))---))-...))) ( -30.30) >DroEre_CAF1 13166 90 - 1 ACAUCCCGUCAAGAAAGGCGAAUUGGUAGCGGUCGCCUGUUGCCAAGAAGUGAUAAUUGGGAAUACAAAAACCAGAACACC---AUGGAAGCC ...(((((((......)))...((((((((((....))))))))))............)))).........(((.......---.)))..... ( -23.70) >DroWil_CAF1 70798 93 - 1 UCAGCGCGCCACGAGCGUCGUAUUGGCAGUGGUCGACUCUUGCCUCGGAACGAUAAUUGGGAGUUUAAAAAACAGGAGACUGACACGGACUCC ...........(((..(((((...(((((.((....)).))))).....)))))..)))(((((((......(((....)))....))))))) ( -25.80) >DroYak_CAF1 11867 90 - 1 ACAUCCCGCCAAGAAAGGCGUAUUGGAAGCGGUCGCCUGUUGCCAAGAAGUGAUAAUUGGGAGUACAAAAAGCAGAACACC---AUAGAAACC ((.(((((((......)))...((((.(((((....))))).))))............)))))).................---......... ( -19.40) >consensus ACAUCCCGCCAAGAAAGGCGGAUUGGUAGCGGUCGGCUGUUGCCAAGAAGUGAUAAUUGGGAUUACAAAAACCAGAAGACC___AUAGAAGCC ...(((((((......)))...((((((((((....))))))))))............))))............................... (-18.77 = -19.72 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:51 2006