Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 972,233 – 972,333 |
Length | 100 |
Max. P | 0.654925 |
Location | 972,233 – 972,333 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 80.82 |
Mean single sequence MFE | -28.72 |
Consensus MFE | -17.78 |
Energy contribution | -17.87 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.46 |
Mean z-score | -1.79 |
Structure conservation index | 0.62 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.654925 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 972233 100 + 1281640 GUUGGUGAUGAAAUCCUCUCAUCUCUCUGGUAGCUAGGAGAUGUGAGGCUGUUUGCUUUGAUCACAUUACCGGAAUCGGAGCUGUCAGAAAAACCUU-AAA ...(((........((((.((((((.((((...)))))))))).))))(((...((((((((..(......)..))))))))...)))....)))..-... ( -33.80) >DroVir_CAF1 7189 101 + 1 GUUUUAGGCGAUAAACGUUCAUCUCUGUGAUAGUUCAUGGGACCGAGACUAUUAUUUUUUAUUAAAUUUGCCGACUCGGAGCCUUCGGGGACACCUAUGUG .....((((............((.((((((....))))))))(((((......((((......)))).......))))).))))..(((....)))..... ( -20.82) >DroSec_CAF1 7865 100 + 1 GUUGGAGAUGAAAUCCUCUCAUCUCUCUGGUAGCUAGGAGAUGUGAGGCUAUUAGUUUUGAUCACAUUACCGGAAUCGGAGCUAUCAGAAAAACCUU-AAA ....(((((((.......)))))))((((((((((....((((((((((.....)))....))))))).(((....)))))))))))))........-... ( -32.20) >DroSim_CAF1 5269 100 + 1 GUUGGAGAUGAAAUCCUCUCAUCUCUCUGGUAGCUAGGAGAUGUGAGGCUAUUAGUUUUGAUCACAUUACCGGAAUCGGAGCUGUCAGAAAAACCUU-AAA ....(((((((.......)))))))((((..((((....((((((((((.....)))....))))))).(((....)))))))..))))........-... ( -30.20) >DroEre_CAF1 8266 101 + 1 GUUGGUGAUGAAAUCCUAUCAUCCCUCUGGUAGCUAGGAGACGUGAGGCUAUUAGUUUUGAUCACAUUACCAGAGUCGGAGCUGUCAGAGAAACCUUGAAA ...((((((((.......))))).(((((..((((.(....)....((((....((..((....))..))...))))..))))..)))))..)))...... ( -28.10) >DroYak_CAF1 6773 101 + 1 GUUGGUGAAGAAAUCCUAUCAUCCCUCUGAUAGCUAGGAGACGUGAGGCUAUUAGUUUGGAUGACGUUACCAGAAUCGGAGCUAUCAGAAAAACCUUGAAA .(((((((((.....)).((((((..(((((((((.(....)....)))))))))...))))))..)))))))..((.((....)).))............ ( -27.20) >consensus GUUGGAGAUGAAAUCCUCUCAUCUCUCUGGUAGCUAGGAGAUGUGAGGCUAUUAGUUUUGAUCACAUUACCGGAAUCGGAGCUGUCAGAAAAACCUU_AAA ......(((((.......)))))..((((((((((.((..(((((((((.....)))....))))))..))........))))))))))............ (-17.78 = -17.87 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:48 2006