Sequence ID | 4_DroMel_CAF1 |
---|---|
Location | 966,864 – 966,959 |
Length | 95 |
Max. P | 0.779835 |
Location | 966,864 – 966,959 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 69.21 |
Mean single sequence MFE | -20.87 |
Consensus MFE | -11.48 |
Energy contribution | -10.60 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.31 |
Mean z-score | -1.64 |
Structure conservation index | 0.55 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.779835 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 966864 95 - 1281640 UGUGUAUUUCUCUAAGUCCUUGCU-----------------------UUCACCUACACCGUCUUAUUUUGUUGCACAGUGUUUUGAAGUGAGAUUUUUCCUCACGAUUAAUCUUACUU ((((((......((((.(..((..-----------------------........))..).))))......))))))........((((((((((..((.....))..)))))))))) ( -17.40) >DroSec_CAF1 2932 118 - 1 UAUGUAUUUCUCUAAGUCCUUGGUUCAGGAGUCAGAUUCGCCAUGUGUUAACCUAUACUGUCUUAUUUUAUUGCACAGUGUUUUAAAGUGGGAUUUUUCCUCACGAUUAAUCUUACUU ((((......(((.(.((((......)))).).))).....)))).........((((((((..........).)))))))....((((((((((..((.....))..)))))))))) ( -21.00) >DroYak_CAF1 3357 113 - 1 U----AUUUCUCUAUAUCCUUGCAUUAGGGACCAGAUUCGCAAAUUGUGCAUUAAAAUUGUCUCAUUUUGUAGCACAGUGUUAUAAAGUGAGAUU-UUCCUCGCUAUUUAUUUUACUU .----................((...(((((........(((.....))).........(((((((((((((((.....))))))))))))))).-))))).)).............. ( -24.20) >consensus U_UGUAUUUCUCUAAGUCCUUGCUU_AGG___CAGAUUCGC_A__UGUUCACCUAAACUGUCUUAUUUUGUUGCACAGUGUUUUAAAGUGAGAUUUUUCCUCACGAUUAAUCUUACUU ...........................................................(((((((((((..((.....))..)))))))))))........................ (-11.48 = -10.60 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:39 2006